SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27860 | AT | Annotation by Michelle Graham. TAIR10: vacuolar iron transporter (VIT) family protein | chr4:13873808-13876240 FORWARD LENGTH=596 | SoyBase | E_val: 2.00E-42 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0010168 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ER body | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005381 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0005384 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: manganese ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF01988 | PFAM | VIT family | JGI | ISS | |
| UniRef100_G7K650 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Integral membrane protein-like protein n=1 Tax=Medicago truncatula RepID=G7K650_MEDTR | SoyBase | E_val: 1.00E-46 | ISS |
| UniRef100_I1JM52 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM52_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g20260 not represented in the dataset |
Glyma03g20260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g084200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g20260.1 sequence type=CDS gene model=Glyma03g20260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCTGAAACGCTGACATTGCAAAAGGAAGTGGTTTTTAACCAGACTTCAAAGCAAGTCATGGCTTCCTCTGATGATGACGCAAAAGTTCCTTTTGTAGAACCCGTTTGTAAAACGATGGTTATAGAACAAGGGAGTGTTGGAAACGGTCAACATCATGATGAAGTGAAGGAAGAAAATTCTGGTCCAGCTAGGCTTTACTTAAATCCTTCTAATTCTTTGGTGTACATGAAAAATGGACCAGCTATTGGCATAGCCATGTCACCCACGGAGGAAGTGCGTGAAGTGTATTTGAAAAACATGTTCATGATGCCACCAAACCATGGATTCTATTGCCCCAATTGTCACATTGATATCAACAAGGTGTTGTTTTGCACAACGCGGCAACAAGATGAGTTTGAAATTAAATCTCCTGGAATGTTACTCAAGGGTCCACCTATTTTGCCTACATTTACCCAGCCCCCGGTTACTACTGAGCCTACGGTTACTACACCTACACTTATCGAACCTGAGCAAGATAATGAATGCCTAGTACGATGCTCAACATGCTTCAGTTTACTCATTCAAAAAGGCAAAGAGTTTTTTACTGGGTTGGTATCACGAGCTCCACAAGAGTTAGAGTCAGGCCAGGGAGATCAGCACGTAGTTCCTATACCAGATTCATCTCCTATAATGCCACAAGGTCCACCATTTACCATCACCAGGCCAGAAAGTACCAAGGGTTGGGAAATTCTTAAGAGTATTGTCTATGGTGGTCTTGCTGAATTATTAGCAAGCCTTAGTGTTGTGACATCTGCAGCAAGTGTTGATGCTACCACATTGAGTATTGTTGCTCTGGGTGTTGCAAATCTGATCGGTGGACTTTCGGTCTTGGGTCACAATCTTAGGGACCTGAAAGCTTCGCAACCAAGACAGGGAAGTGAAACACAAGCACAAGAGGACAAATATTATGAACTATTGGGAAAGCGGGAGAATTTCTATCTACATGCCTTTTTTGCTATCTTATCATTCCTCATATTTGGGTTAGTGCCTCCAATAGCATACGGCTTCTCATTCCGTGAGAGTAATGACAAGGATCTCAAGCTTGCAGCTGTTGCGGTAGCTTCTCTAATTTGCATCACATTGCTTGGCATGGCAAAAGCTCATATCCAAAGATCCAATACTTTTATGACATACTTTAAAACGGTGACGTTTTATGTTACCTCTGGAGTATTGGCCTCACTACTTACTTATGAAGCTGGAGCCCTAATGAAGAAACTTGTAGAACAGCTTGGATGGTTTGAAACAAAATCAAACTTTGGCTTGACTCTTCCTGAGATGATGAGTATAAAGAAATCAGGATGGGGTTCGTACTAA
>Glyma03g20260.1 sequence type=predicted peptide gene model=Glyma03g20260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAETLTLQKEVVFNQTSKQVMASSDDDAKVPFVEPVCKTMVIEQGSVGNGQHHDEVKEENSGPARLYLNPSNSLVYMKNGPAIGIAMSPTEEVREVYLKNMFMMPPNHGFYCPNCHIDINKVLFCTTRQQDEFEIKSPGMLLKGPPILPTFTQPPVTTEPTVTTPTLIEPEQDNECLVRCSTCFSLLIQKGKEFFTGLVSRAPQELESGQGDQHVVPIPDSSPIMPQGPPFTITRPESTKGWEILKSIVYGGLAELLASLSVVTSAASVDATTLSIVALGVANLIGGLSVLGHNLRDLKASQPRQGSETQAQEDKYYELLGKRENFYLHAFFAILSFLIFGLVPPIAYGFSFRESNDKDLKLAAVAVASLICITLLGMAKAHIQRSNTFMTYFKTVTFYVTSGVLASLLTYEAGALMKKLVEQLGWFETKSNFGLTLPEMMSIKKSGWGSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
