|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G44710 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18041621-18042322 FORWARD LENGTH=102 | SoyBase | E_val: 4.00E-46 | ISS |
GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
GO:0016925 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein sumoylation | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
KOG4844 | KOG | Mitochondrial ribosomal protein S27 | JGI | ISS | |
PF08293 | PFAM | Mitochondrial ribosomal subunit S27 | JGI | ISS | |
UniRef100_I1JKA9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKA9_SOYBN | SoyBase | E_val: 2.00E-57 | ISS |
UniRef100_Q013L1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 08 n=1 Tax=Ostreococcus tauri RepID=Q013L1_OSTTA | SoyBase | E_val: 2.00E-15 | ISS |
Glyma03g20140 not represented in the dataset |
Glyma03g20140 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.03g084100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g20140.3 sequence type=transcript gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTAGTAGCTCGAATGTCAAGGACGAGACATCCGTGCTTGATTCAAAAGGGAATAACCTGACCCGTGAGACATAAGAATGATCGTGATTCTACCTTCTAAAGAAAGATCAATAAAAAAGAAACCCACATGAACTTTTTCCTTTTAAAATAATATTGTTTGCATGCGCAAAGGTGTCGTATCGATGCAAATGTCCATCATCATCATCATCAATTAACTTATCTAATGGCCAACATTCCTATCGCGCTCCTATTGCATGGTACAAGACCTATAACCTCTTGCATGTTAGCCTGTGTCACCGGAAACCAAACATACTCTAAAAGGTAAAAAGACGGGCACTTATTGAAAAGATGCATTCTTGAGGGGTCAAAATGCGATCCCATAAAAGGATTTCATTAATCCCGCGGCCTCCATCTTTATTCGTCTTTCTCATACCTCTTCAACGACGCTCTCTCCCATTCCTTGCGCACAATAACATCGTGAACGCTCCTTCTCCGACCAGAGATCAATGTTGTCTTGTTCTTGTACATCGTGAAGTGCCTTTCTTGCCCTTATTGCTCACGAAAGAAGATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGACTTGGTAGTATAATGTTTCCAGGAGCTTTCTTGCCATGTCTTTGCTGATGAATTCTGGGGATTGTGTCATCAGAGTGACTTAGTTCTTAGGCCAATTATCAGGGACTTGACCTCACTTATCTGTCATCCAACAAACTTCTATGTTCATGTTTCAGACCTTTGATACACATTGAATAAGCTTTCTTTAGCCTTAATAAAGGCTGTGGTTTAAAGTTAGTTCTCTGAAACTTAAGTTTGGTAAACTAATAGAGATAGTTGAATTGGTTTGTGTTTCAAGTTTGCCATGCTTTTTACTTCTAACATCTGCTTATGTTGTTACTGATATACTGTCAAAGGTTGGTCTTCACATTTGGGTTTGTCCTTTGGTTACTGATGTATATGTAATGCCTGGTACTATTTATTCGTCAATATCTTTGATACTTTGACAGGCATTGCAAAAAGAACATCTTTCTTCAGCTTTCATAACAATGGTTTAGTGCCCTACACTTAGACGTCTATCAAAGCTTGAAATGTTGAAGCGGCGAGGAAAAGGACCACCTAAGAAGGGCCAAGGAAGGCGTGCGGCCAAACGCAACAAATAAATTATACTTTCGCCTCTCTCTCTGGAATTATTTTGAGGGTACTCTTTTAAGGCAAGTACTTGTTTATGTGATAACACTTTGAATTTGATTATCAGAATGTAAACGCATGCATTTTAGAGTTGAAACCACTAGCCTAATTTGGTTGAGGTCTCTGTCCTCTATGTGCAATTAATTTTTCTGAAATTGATTCAGTCTATCTTGGAAGTAGGTATGCAACCCCAAGGTTATAAATTATAAATTGGCCATTTTCTTATTGATTTTGTTATTATAGTCGGATTGTTGGATGAAGTGGACTCTGTACTTCATAATATTTAATTTAAATGTTTTAATTTTAAATCATATTCATAATA >Glyma03g20140.4 sequence type=transcript gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTAGTAGCTCGAATGTCAAGGACGAGACATCCGTGCTTGATTCAAAAGGGAATAACCTGACCCGTGAGACATAAGAATGATCGTGATTCTACCTTCTAAAGAAAGATCAATAAAAAAGAAACCCACATGAACTTTTTCCTTTTAAAATAATATTGTTTGCATGCGCAAAGGTGTCGTATCGATGCAAATGTCCATCATCATCATCATCAATTAACTTATCTAATGGCCAACATTCCTATCGCGCTCCTATTGCATGGTACAAGACCTATAACCTCTTGCATGTTAGCCTGTGTCACCGGAAACCAAACATACTCTAAAAGGTAAAAAGACGGGCACTTATTGAAAAGATGCATTCTTGAGGGGTCAAAATGCGATCCCATAAAAGGATTTCATTAATCCCGCGGCCTCCATCTTTATTCGTCTTTCTCATACCTCTTCAACGACGCTCTCTCCCATTCCTTGCGCACAATAACATCGTGAACGCTCCTTCTCCGACCAGAGATCAATGTTGTCTTGTTCTTGTACATCGTGAAGTGCCTTTCTTGCCCTTATTGCTCACGAAAGAAGATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGACTTGGTAGTATAATGTTTCCAGGAGCTTTCTTGCCATGTCTTTGCTGATGAATTCTGGGGATTGTGTCATCAGAGTGACTTAGTTCTTAGGCCAATTATCAGGGACTTGACCTCACTTATCTGTCATCCAACAAACTTCTATGTTCATGTTTCAGACCTTTGATACACATTGAATAAGCTTTCTTTAGCCTTAATAAAGGCTGTGGTTTAAAGTTAGTTCTCTGAAACTTAAGTTTGGTAAACTAATAGAGATAGTTGAATTGGTTTGTGTTTCAAGTTTGCCATGCTTTTTACTTCTAACATCTGCTTATGTTGTTACTGATATACTGTCAAAGGTTGGTCTTCACATTTGGGTTTGTCCTTTGGTTACTGATGTATATGTAATGCCTGGTACTATTTATTCGTCAATATCTTTGATACTTTGACAGGCATTGCAAAAAGAACATCTTTCTTCAGCTTTCATAACAATGGTTTAGTGCCCTACACTTAGGTACTTTAGCAATTTGTAGAAGCTGATTCCTCGAGTGTATGTTGATTTGCTATCATAAAAATAGATTTTTTTTTTTTTTGTTTCCTTGTCACAGCAATGTCTTCTCTTTTGGCAAAAGTACTTTTTTCCTGAAACATTACACTATATTTAATTTTGTTTTTAAAGTACCTTTTTTTTCTACTTTGTATTGTTATCACTTGTGCCCTGCTTGAAGGTGATTTGACAGAGTCACTGAGAGGATCATTAACTTGGAACAAAACAAGTTTTTAAACCCTGTTGAAAAAAATTAGATGGCATTATTACAATTGAAAAATGAATTCGTGTTTTAATTTGGTTTCAACTTTTGATGTAGATATGTTTCTTCATTTACTGCAAAAAAAACGCTGGGGATATTTATGTAGATATTGATGTTTCTTCATTAGCACAGATACCATGTTAGTGAAATCCATGTGATGAAACAGAGATACCATGTTAGTGAAGTCCATGTGATGAAACAGAGATATCATGTTAGCGAAGTCCATGTGTTACCAATAGTTATAGTATTCCTGTTCTTATATATACCACAAAAATTTGGTTTATGTCCTATTTTTATTTTTCTGTTTATGCGAATTCAATTTGGTGATTTTGGTTGCTTGTGAGTTCCTTTTTTTGGTTGCTGCCAAGACTTTGAAGTTTGATTCCATTTGCACTTTGAAGTTTGAGCACGGTTCCAATCTTACCAGATGTATGACCCGATGAGGGCTGTAACATGGGCACTGTTTGCTAGTAAAAAGCTCTCAATTCAATGACTTTCAAACACATGAATGGATTTGTCCAAGCATTTCATAGAGACCTGAAGGATAATAACACCTTTTACATTTATTATGTTCTTGCAAACTACTCCATGGCTGCCAGAGGCTACAATGAGATCAATTCACGCTTATTCTAGTCTAATATTTCCCATTGCTCTCTGGCAGATTATGGAAGTTACTATTCATTATATAAAAGATGCAGAGAAAAATCATTTAAAAAAAAACAGTTTGAAAACCAGGTCGGAATTGGTTTGGTTTTAAAAACTGGTTTGAAACTAGTTATGTTCAGAACCCGTTTTTAAAAACTAGTTCAGTTTCGAATTGATTTATCAGACCAGTTCTTATATTTGGTTTAAAAACCGAACCAATTTGGTTCGGTTTCATGATGTTCTTTATGTTAGTCAGAAAATAATCTGTGGTAGCTTCTACAAGTTTATCTTACATTGACTTCCTCTCATTCAACAACATTTGTTATATTGTACTTTCTAGACGTCTATCAAAGCTTGAAATGTTGAAGCGGCGAGGAAAAGGACCACCTAAGAAGGGCCAAGGAAGGCGTGCGGCCAAACGCAACAAATAAATTATACTTTCGCCTCTCTCTCTGGAATTATTTTGAGGGTACTCTTTTAAGGCAAGTACTTGTTTATGTGATAACACTTTGAATTTGATTATCAGAATGTAAACGCATGCATTTTAGAGTTGAAACCACTAGCCTAATTTGGTTGAGGTCTCTGTCCTCTATGTGCAATTAATTTTTCTGAAATTGATTCAGTCTATCTTGGAAGTAGGTATGCAACCCCAAGGTTATAAATTATAAATTGGCCATTTTCTTATTGATTTTGTTATTATAGTCGGATTGTTGGATGAAGTGGACTCTGTACTTCATAATATTTAATTTAAATGTTTTAATTTTAAATCATATTCATAATA >Glyma03g20140.5 sequence type=transcript gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTAGTAGCTCGAATGTCAAGGACGAGACATCCGTGCTTGATTCAAAAGGGAATAACCTGACCCGTGAGACATAAGAATGATCGTGATTCTACCTTCTAAAGAAAGATCAATAAAAAAGAAACCCACATGAACTTTTTCCTTTTAAAATAATATTGTTTGCATGCGCAAAGGTGTCGTATCGATGCAAATGTCCATCATCATCATCATCAATTAACTTATCTAATGGCCAACATTCCTATCGCGCTCCTATTGCATGGTACAAGACCTATAACCTCTTGCATGTTAGCCTGTGTCACCGGAAACCAAACATACTCTAAAAGGTAAAAAGACGGGCACTTATTGAAAAGATGCATTCTTGAGGGGTCAAAATGCGATCCCATAAAAGGATTTCATTAATCCCGCGGCCTCCATCTTTATTCGTCTTTCTCATACCTCTTCAACGACGCTCTCTCCCATTCCTTGCGCACAATAACATCGTGAACGCTCCTTCTCCGACCAGAGATCAATGTTGTCTTGTTCTTGTACATCGTGAAGTGCCTTTCTTGCCCTTATTGCTCACGAAAGAAGATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGACTTGGTAGTATAATGTTTCCAGGAGCTTTCTTGCCATGTCTTTGCTGATGAATTCTGGGGATTGTGTCATCAGAGTGACTTAGTTCTTAGGCCAATTATCAGGGACTTGACCTCACTTATCTGTCATCCAACAAACTTCTATGTTCATGTTTCAGACCTTTGATACACATTGAATAAGCTTTCTTTAGCCTTAATAAAGGCTGTGGTTTAAAGTTAGTTCTCTGAAACTTAAGTTTGGTAAACTAATAGAGATAGTTGAATTGGTTTGTGTTTCAAGTTTGCCATGCTTTTTACTTCTAACATCTGCTTATGTTGTTACTGATATACTGTCAAAGGTTGGTCTTCACATTTGGGTTTGTCCTTTGGTTACTGATGTATATGTAATGCCTGGTACTATTTATTCGTCAATATCTTTGATACTTTGACAGGCATTGCAAAAAGAACATCTTTCTTCAGCTTTCATAACAATGGTTTAGTGCCCTACACTTAGGTACTTTAGCAATTTGTAGAAGCTGATTCCTCGAGTGTATGTTGATTTGCTATCATAAAAATAGATTTTTTTTTTTTTTGTTTCCTTGTCACAGCAATGTCTTCTCTTTTGGCAAAAGTACTTTTTTCCTGAAACATTACACTATATTTAATTTTGTTTTTAAAGTACCTTTTTTTTCTACTTTGTATTGTTATCACTTGTGCCCTGCTTGAAGGTGATTTGACAGAGTCACTGAGAGGATCATTAACTTGGAACAAAACAAGTTTTTAAACCCTGTTGAAAAAAATTAGATGGCATTATTACAATTGAAAAATGAATTCGTGTTTTAATTTGGTTTCAACTTTTGATGTAGATATGTTTCTTCATTTACTGCAAAAAAAACGCTGGGGATATTTATGTAGATATTGATGTTTCTTCATTAGCACAGATACCATGTTAGTGAAATCCATGTGATGAAACAGAGATACCATGTTAGTGAAGTCCATGTGATGAAACAGAGATATCATGTTAGCGAAGTCCATGTGTTACCAATAGTTATAGTATTCCTGTTCTTATATATACCACAAAAATTTGGTTTATGTCCTATTTTTATTTTTCTGTTTATGCGAATTCAATTTGGTGATTTTGGTTGCTTGTGAGTTCCTTTTTTTGGTTGCTGCCAAGACTTTGAAGTTTGATTCCATTTGCACTTTGAAGTTTGAGCACGGTTCCAATCTTACCAGATGTATGACCCGATGAGGGCTGTAACATGGGCACTGTTTGCTAGTAAAAAGCTCTCAATTCAATGACTTTCAAACACATGAATGGATTTGTCCAAGCATTTCATAGAGACCTGAAGGATAATAACACCTTTTACATTTATTATGTTCTTGCAAACTACTCCATGGCTGCCAGAGGCTACAATGAGATCAATTCACGCTTATTCTAGTCTAATATTTCCCATTGCTCTCTGGCAGATTATGGAAGTTACTATTCATTATATAAAAGATGCAGAGAAAAATCATTTAAAAAAAAACAGTTTGAAAACCAGGTCGGAATTGGTTTGGTTTTAAAAACTGGTTTGAAACTAGTTATGTTCAGAACCCGTTTTTAAAAACTAGTTCAGTTTCGAATTGATTTATCAGACCAGTTCTTATATTTGGTTTAAAAACCGAACCAATTTGGTTCGGTTTCATGATGTTCTTTATGTTAGTCAGAAAATAATCTGTGGTAGCTTCTACAAGTTTATCTTACATTGACTTCCTCTCATTCAACAACATTTGTTATATTGTACTTTCTAGACGTCTATCAAAGCTTGAAATGTTGAAGCGGCGAGGAAAAGGACCACCTAAGAAGGGCCAAGGAAGGCGTGCGGCCAAACGCAACAAATAAATTATACTTTCGCCTCTCTCTCTGGAATTATTTTGAGGGTACTCTTTTAAGGAAGAGTCAAGCCAAAGTTTGATTTTGTTTCAAACCATCCAAGCTGTTCTACAAGTTTCTTCATTAGGGCTCCAGCTTCATAAGTAAGTAGTGAGGCCAATACTCCAGAGGTAACATAAAACGTCACCGTTTTAAAGTATGTCATAAAAGTATTGGATCTTTGGATATGAGCTTTTGCCATGCCAAGCAATGTGATGCAAATTAGAGAAGCTACCGCAACAGCTGCAAGCTTGAGATCCTTGTCATTACTCTCACGGAATGAGAAGCCGTATGCTATTGGAGGCACTAACCCAAATATGAGGAATGATAAGATAGCAAAAAAGGCATGTAGATAGAAATTCTCCCGCTTTCCCAATAGTTCATAATATTTGTCCTCTTGTGCTTGTGTTTCACTTCCCTGTCTTGGTTGCGAAGCTTTCAGGTCCCTAAGCTGTGCGCATATAGAGGAATTAGTTTTAATGGGGAAAAA
>Glyma03g20140.2 sequence type=CDS gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGAACGTCTATCAAAGCTTGAAATGTTGAAGCGGCGAGGAAAAGGACCACCTAAGAAGGGCCAAGGAAGGCGTGCGGCCAAACGCAACAAATAA >Glyma03g20140.3 sequence type=CDS gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGACTTGGTAGTATAA >Glyma03g20140.4 sequence type=CDS gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGACTTGGTAGTATAA >Glyma03g20140.5 sequence type=CDS gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGACTAGAGTTAGTTTGAAGAATGTGTTAAGTGCAGTGATCAATCAAGGAGCGGCGGAAGCGCGAGCTTGGATCTTCGGCCACCAATTGAACCCCGCAGGCAACAAAACTCCTCACAAGATTCTTCGCATGAAGCTCTTCGGTGAAAAAGTCGCTCAGTGGTACCCTCACGACATCAAGAAAGACGACCCTCTTGTCATGGCTCGTCAAGAACAAGACTTGGTAGTATAA
>Glyma03g20140.2 sequence type=predicted peptide gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMTRVSLKNVLSAVINQGAAEARAWIFGHQLNPAGNKTPHKILRMKLFGEKVAQWYPHDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK* >Glyma03g20140.3 sequence type=predicted peptide gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMTRVSLKNVLSAVINQGAAEARAWIFGHQLNPAGNKTPHKILRMKLFGEKVAQWYPHDIKKDDPLVMARQEQDLVV* >Glyma03g20140.4 sequence type=predicted peptide gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMTRVSLKNVLSAVINQGAAEARAWIFGHQLNPAGNKTPHKILRMKLFGEKVAQWYPHDIKKDDPLVMARQEQDLVV* >Glyma03g20140.5 sequence type=predicted peptide gene model=Glyma03g20140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMTRVSLKNVLSAVINQGAAEARAWIFGHQLNPAGNKTPHKILRMKLFGEKVAQWYPHDIKKDDPLVMARQEQDLVV*
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