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Report for Sequence Feature Glyma03g19460

Feature Type:gene_model
Chromosome:Gm03
Start:24727108
stop:24729564
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g19460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46560AT Annotation by Michelle Graham. TAIR10: Tim10/DDP family zinc finger protein | chr3:17138632-17139301 FORWARD LENGTH=93 SoyBaseE_val: 1.00E-40ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0045039GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial inner membrane SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0005758GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space SoyBaseN/AISS
GO:0042719GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial intermembrane space protein transporter complex SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
KOG3479 KOG Mitochondrial import inner membrane translocase, subunit TIM9 JGI ISS
PTHR10898Panther MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9 JGI ISS
PF02953PFAM Tim10/DDP family zinc finger JGI ISS
UniRef100_I1JM38UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM38_SOYBN SoyBaseE_val: 5.00E-62ISS
UniRef100_Q9XGX8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit Tim9 n=1 Tax=Mesembryanthemum crystallinum RepID=TIM9_MESCR SoyBaseE_val: 4.00E-42ISS

Expression Patterns of Glyma03g19460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g19460 not represented in the dataset
Glyma03g19460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g19460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g082300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g19460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g19460
>Glyma03g19460.1   sequence type=CDS   gene model=Glyma03g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAGAACATAATATCAGACTTGGATAATTTTCCTGAAGAAGATAAGCAAAGAATGTCCACCATGGCAGACCAGCTCCAAATCCGGGACAGTCTAAGGATGTATAATTCATTAGTGGAGAAATGTTTCAAGGAATGTGTCAATACATTCTATCGGAAATCCATGACCAAGCAAGAAGAAACTTGTGTTCTCAGATGTGCTCAAAAGTACTTGAGGCTTTCAATGCAAGTTGGCTTGAGATTTTCAGATCTCAACCAAGGATCATCTACAACAGATAAATAG
Predicted protein sequences of Glyma03g19460
>Glyma03g19460.1   sequence type=predicted peptide   gene model=Glyma03g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKNIISDLDNFPEEDKQRMSTMADQLQIRDSLRMYNSLVEKCFKECVNTFYRKSMTKQEETCVLRCAQKYLRLSMQVGLRFSDLNQGSSTTDK*






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