Report for Sequence Feature Glyma03g18710
Feature Type: gene_model
Chromosome: Gm03
Start: 23827843
stop: 23831732
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g18710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01900 AT
Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417
SoyBase E_val: 0 ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0046854 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG0565
KOG
Inositol polyphosphate 5-phosphatase and related proteins
JGI ISS
PTHR11200 Panther
INOSITOL 5-PHOSPHATASE
JGI ISS
PTHR11200:SF29 Panther
INOSITOL PHOSPHATASE SKIP
JGI ISS
PF03372 PFAM
Endonuclease/Exonuclease/phosphatase family
JGI ISS
UniRef100_G7IBG6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Type II inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7IBG6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233A650 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A650 related cluster n=1 Tax=unknown RepID=UPI000233A650
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g18710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma03g18710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g081200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g18710
Coding sequences of Glyma03g18710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g18710.1 sequence type=CDS gene model=Glyma03g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTGGAAAGCTAGCTCAATTCACGTGGCCTGCATTAGTGGCTAATGAGATACTCAACAAGCGACTGGGAAGCAGCAATTTTATAGCAGATTTTCCAAGCAACACAGAACCCTTATTGAGTCATGATCAGTCATCTCTGAGCTCTAAAACTATGCTTAATGATCAGAAGGATACACAAAAAAACAAGATTTTTGTCAGCACATGGAACGTAGGTGGGATTGCCCCAGATGAAGGACTGAATATGGAGGATTTGTTGGAGACACGCAACAATTCCTATGACATCTATGTACTTGGGTTTCAAGAAATTGTGCCTCTAAAAGCATCCAATGTGTTGGGGTATCAAAACAGTAAGATTTCCACCAAGTGGAATTCCATAATCAGAGAAGCTCTGAACAAGAACAACACGCATGTACTTCACAGTTTCAAATTAGATGAAGAAGGTCTGCAAGGCCCACAAGATTTCGAATGTATCATTAGCAAGCAAATGGTTGGTATATTGATATCAGTATGGGCTAAGAGAGACCTTCGTCCATTCATTCAACATCCAAGTGTCTGTTGCGTCGGATGTGGCATCATGGGATGCTTAGGGAACAAGGGTTCTGTATCTGTGAGATTTGTGTTACATGAAACAAGCTTTTGCTTTGTGTGTGGTCACCTAGCTTCTGGTGGGAGAGAGGGAGACGAGAAGCATAGAAACTCTAATGTTGCTGAAATATTTTCACGGACAAGCTTTCCTAGAAGAGGACCTATGCTTGATTTGCCGAGAAAGATTCTTGATCACGAACACGTAATATTGCTTGGAGATTTAAATTACAGAATTTCTCTACCGGAAGAAACAACACGCTTACTTGTTGAAAACGAAGACTGGGATTCCCTACTAGAATATGATCAGCTAATGATGGAGCTAATGAGGGGAAATATGTTAAAAGGATGGCATGAAGGAGCAATCAAATTTGCCCCAACCTACAAGTATTGTCCAAATTCAGACCTGTACTATGGATGTTGTTATCACGGCAAAAAGGCAGCGAAGAAGCGAGCACCTGCATGGTGTGACAGAATTATATGGTTCGGCAACGGTTTAAAGCAAATTCAATACGCTAGATGTGAATCAAAACTATCGGATCACAGGCCCGTCAAGGCATTGTTTATAGCACAAGTGAGGGTTTCATCAGCAGCACTAAGAAGCTTTCAAAACTTGTTTCTATCAGAGAGATTTGAACAAATTGAAACTCCCTTTGAAGTTTCCCCCACCTATGAGTTTGTGTGTAAAAAGCAATCAAGTTTCCGGTTGTGA
Predicted protein sequences of Glyma03g18710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g18710.1 sequence type=predicted peptide gene model=Glyma03g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTGKLAQFTWPALVANEILNKRLGSSNFIADFPSNTEPLLSHDQSSLSSKTMLNDQKDTQKNKIFVSTWNVGGIAPDEGLNMEDLLETRNNSYDIYVLGFQEIVPLKASNVLGYQNSKISTKWNSIIREALNKNNTHVLHSFKLDEEGLQGPQDFECIISKQMVGILISVWAKRDLRPFIQHPSVCCVGCGIMGCLGNKGSVSVRFVLHETSFCFVCGHLASGGREGDEKHRNSNVAEIFSRTSFPRRGPMLDLPRKILDHEHVILLGDLNYRISLPEETTRLLVENEDWDSLLEYDQLMMELMRGNMLKGWHEGAIKFAPTYKYCPNSDLYYGCCYHGKKAAKKRAPAWCDRIIWFGNGLKQIQYARCESKLSDHRPVKALFIAQVRVSSAALRSFQNLFLSERFEQIETPFEVSPTYEFVCKKQSSFRL*