SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g18670

Feature Type:gene_model
Chromosome:Gm03
Start:23719781
stop:23720305
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g18670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47670AT Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205 SoyBaseE_val: 3.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0033613GO-mf Annotation by Michelle Graham. GO Molecular Function: activating transcription factor binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0869 KOG CCAAT-binding factor, subunit A (HAP3) JGI ISS
PTHR11064Panther TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN JGI ISS
PTHR11064:SF9Panther CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A JGI ISS
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI ISS
UniRef100_G7ICG4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear trancription factor Y subunit B10 n=1 Tax=Medicago truncatula RepID=G7ICG4_MEDTR SoyBaseE_val: 4.00E-71ISS
UniRef100_UPI000233A64EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A64E related cluster n=1 Tax=unknown RepID=UPI000233A64E SoyBaseE_val: 2.00E-127ISS

Expression Patterns of Glyma03g18670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g18670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g080700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g18670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g18670
>Glyma03g18670.2   sequence type=CDS   gene model=Glyma03g18670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGAGTGAGGGAGCAGGACCAGTATATGCCGATAGCAAACGTGATAAGGATCATGCGGAGGATTCTACCGGCGCACGCGAAGATCTCGGACGACGCGAAGGAGACAATCCAGGAGTGCGTGTCGGAGTACATAAGCTTCATCACGGCAGAGGCGAATGAGCGATGCCAGCGCGAGCAGCGAAAGACGGTGACTGCAGAGGACGTGCTGTGGGCGATGGAGAAGCTCGGCTTCGACAACTACGCCCACCCTCTCTCTCTTTACCTTCACCGCTATCGCAAGACCGAAGGCGAACCCGCTTCCGCCAGACGTGCTTCTGCATCTGCATCCCCATCGATGCAGATGCACCCACGCACACACCCACACTCACATCCACCTAATTATTCTCATCATGGCTTCGGAATGTTTGACTTTGACCCATCATCGCAAGGGTTTTACAGGGATGATGCATCTAGTTCTGGCTCTGGTGGATTTGTTGCCAGTTTTGATCCTTATGCTAACATCAAACGTGATCCCCTGTGA
Predicted protein sequences of Glyma03g18670
>Glyma03g18670.2   sequence type=predicted peptide   gene model=Glyma03g18670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGVREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITAEANERCQREQRKTVTAEDVLWAMEKLGFDNYAHPLSLYLHRYRKTEGEPASARRASASASPSMQMHPRTHPHSHPPNYSHHGFGMFDFDPSSQGFYRDDASSSGSGGFVASFDPYANIKRDPL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo