SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09350 | AT | Annotation by Michelle Graham. TAIR10: Fes1A | chr3:2871216-2873109 FORWARD LENGTH=363 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0030544 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Hsp70 protein binding | SoyBase | N/A | ISS |
| KOG2160 | KOG | Armadillo/beta-catenin-like repeat-containing protein | JGI | ISS | |
| PTHR19316 | Panther | PROTEIN FOLDING REGULATOR | JGI | ISS | |
| PTHR19316:SF4 | Panther | gb def: agcp10959 [anopheles gambiae str. pest] | JGI | ISS | |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| PF08609 | PFAM | Nucleotide exchange factor Fes1 | JGI | ISS | |
| UniRef100_B7FKA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hsp70 nucleotide exchange factor fes1 n=1 Tax=Medicago truncatula RepID=B7FKA1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JM15 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM15_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g17870 not represented in the dataset |
Glyma03g17870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g070400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g17870.2 sequence type=transcript gene model=Glyma03g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGACACCGGCCATCTCCAATATCCGTAGCAAGGCCCATCATCACATCACAACTTCCCAACCCAACCACCCAGAAAAAAACACACAAAAGCCAAATTTTGACGTTTCCTTTCCTCTTTCTTTCCCTTTTCCTCGTTTCCACGACCCTCTCGAATTCTTGAGACGTTTCCCGAATCTTCACTACGCACGTTTCTGAAACTATATAATATCTAAAATCCCTTCACTTCCCATTCCTAAAACCTCTTACAAAAACCGTACAACAAGGTTGTTTTTGTTTTGTTTTGTGTTTTCTCTCTAATCATTCGAATGGCCAAAGAAGGACCTAACTGGGACGGGTTGCTGAAATGGAGCATTGCTCACTCCGATGGGACTAGCCCTACTCGCAATTTAAGTGAGGAGGATCGAAAATGGTTTATGGAAGCGATGCAAGCACAGACCATTGATGTTGTAAAACGTATGAAAGAGATCACACTTGTGATGCAAACTCCAGAACAAGTATTGAAAGACCAAGGAGTTACCCCTGCAGACATTGAAGATATGTTGGAAGAGTTGCAAGAGCATGTTGAGTCGATTGACATGGCCAATGCACTAATTCGGCACAACAAACCAGGCATTACTGCATTTCGTTTGGCAAATGGGTATGCAGCTTTGAAAGATGCTCTAGCCTCTGAAAATGTGAGATTTCAAAGGAAAGCTCTCAACTTGATCCATTACCTGTTGCATGAGAATAATTCAGACTGCAACATCGTGAACGAGCTTGGGTTTCCTCGAATGTTGATGCACCTTGCCTCAAGTGAAGATTCAGATGTGAGAGAAGCTGCCCTTCGTGGCCTTCTCCAGCTTGCTCACAATGCGAAAGATGGCAAGGATGGCAATGAGAAAGACAGTGTGAAAATAAAGCAACTTCTTCAAGAACGAATAAACAACATCAGTTTAATGTCAGCTGAGGACCTTGGTGTAGTCAGGGAGGAGAGGCAACTTGTGGACTCCCTGTGGAGCACTTGCTTCAACGAGCCGTCTTCTCTTCGAGAGAAAGGTCTTCTAGTGCTTCCGGGGGAGGACGTGCCCCCTCCAGATGTTGCTAGCAAATATTTTGAGCCTCCTCTTAGATCTTCGACTGCAAATCCATCTTCAAAGAAAGACCCAGAAAAGAATGAGATCCCTTTGCTTTTAGGGTCAGGACCTTCTCCTACATACACTAACAACCAAGGTTCAAATAAAGGAGATGCTAGTTCATAGACAGATGCTAATATATCGAAAGTTTAAATGCTTTATGTTCTGTTTTTTATACCATGCTTTCTTTCTATCTTATCATACAATAGTAATTTCTTTCTTTCACTTATAGGCTATGTTTTTAACCCTTTCTTCTGGCCTCAGATTGGTTTTCCCTAGTATTTCTAGGATGATGATCTCATGGTATGTTACACTGTGACACTATAACTAGCCCTCCATTGTAGTTTGTTAATGTATGATTGCAGCGGTGAATGCCTTCATTTTTTTGTGCCTTCATTTTTTTGCACTTTGATATTTTCAAA
>Glyma03g17870.1 sequence type=CDS gene model=Glyma03g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGAAGGACCTAACTGGGACGGGTTGCTGAAATGGAGCATTGCTCACTCCGATGGGACTAGCCCTACTCGCAATTTAAGTGAGGAGGATCGAAAATGGTTTATGGAAGCGATGCAAGCACAGACCATTGATGTTGTAAAACGTATGAAAGAGATCACACTTGTGATGCAAACTCCAGAACAAGTATTGAAAGACCAAGGAGTTACCCCTGCAGACATTGAAGATATGTTGGAAGAGTTGCAAGAGCATGTTGAGTCGATTGACATGGCCAATGATCTCCACTCAATTGGTGGTTTGGTTCCTCTTCTTGGTTACCTAAAGAATTCTCATGCCAATATTCGAGCAATGGCTGCTGATGTTGTGACCACAATAGTCCAGAATAATCCTCGAAGTCAGCAACTTGTTATGGAAGCAAATGGCTTTGAACCTCTTATTTCTAATTTTAGTTCGGATCCTGACGTGACTGTTAGAACTAAAGCACTGGGTGCAATATCTTCACTAATTCGGCACAACAAACCAGGCATTACTGCATTTCGTTTGGCAAATGGGTATGCAGCTTTGAAAGATGCTCTAGCCTCTGAAAATGTGAGATTTCAAAGGAAAGCTCTCAACTTGATCCATTACCTGTTGCATGAGAATAATTCAGACTGCAACATCGTGAACGAGCTTGGGTTTCCTCGAATGTTGATGCACCTTGCCTCAAGTGAAGATTCAGATGTGAGAGAAGCTGCCCTTCGTGGCCTTCTCCAGCTTGCTCACAATGCGAAAGATGGCAAGGATGGCAATGAGAAAGACAGTGTGAAAATAAAGCAACTTCTTCAAGAACGAATAAACAACATCAGTTTAATGTCAGCTGAGGACCTTGGTGTAGTCAGGGAGGAGAGGCAACTTGTGGACTCCCTGTGGAGCACTTGCTTCAACGAGCCGTCTTCTCTTCGAGAGAAAGGTCTTCTAGTGCTTCCGGGGGAGGACGTGCCCCCTCCAGATGTTGCTAGCAAATATTTTGAGCCTCCTCTTAGATCTTCGACTGCAAATCCATCTTCAAAGAAAGACCCAGAAAAGAATGAGATCCCTTTGCTTTTAGGGTCAGGACCTTCTCCTACATACACTAACAACCAAGGTTCAAATAAAGGAGATGCTAGTTCATAG >Glyma03g17870.2 sequence type=CDS gene model=Glyma03g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGAAGGACCTAACTGGGACGGGTTGCTGAAATGGAGCATTGCTCACTCCGATGGGACTAGCCCTACTCGCAATTTAAGTGAGGAGGATCGAAAATGGTTTATGGAAGCGATGCAAGCACAGACCATTGATGTTGTAAAACGTATGAAAGAGATCACACTTGTGATGCAAACTCCAGAACAAGTATTGAAAGACCAAGGAGTTACCCCTGCAGACATTGAAGATATGTTGGAAGAGTTGCAAGAGCATGTTGAGTCGATTGACATGGCCAATGCACTAATTCGGCACAACAAACCAGGCATTACTGCATTTCGTTTGGCAAATGGGTATGCAGCTTTGAAAGATGCTCTAGCCTCTGAAAATGTGAGATTTCAAAGGAAAGCTCTCAACTTGATCCATTACCTGTTGCATGAGAATAATTCAGACTGCAACATCGTGAACGAGCTTGGGTTTCCTCGAATGTTGATGCACCTTGCCTCAAGTGAAGATTCAGATGTGAGAGAAGCTGCCCTTCGTGGCCTTCTCCAGCTTGCTCACAATGCGAAAGATGGCAAGGATGGCAATGAGAAAGACAGTGTGAAAATAAAGCAACTTCTTCAAGAACGAATAAACAACATCAGTTTAATGTCAGCTGAGGACCTTGGTGTAGTCAGGGAGGAGAGGCAACTTGTGGACTCCCTGTGGAGCACTTGCTTCAACGAGCCGTCTTCTCTTCGAGAGAAAGGTCTTCTAGTGCTTCCGGGGGAGGACGTGCCCCCTCCAGATGTTGCTAGCAAATATTTTGAGCCTCCTCTTAGATCTTCGACTGCAAATCCATCTTCAAAGAAAGACCCAGAAAAGAATGAGATCCCTTTGCTTTTAGGGTCAGGACCTTCTCCTACATACACTAACAACCAAGGTTCAAATAAAGGAGATGCTAGTTCATAG
>Glyma03g17870.1 sequence type=predicted peptide gene model=Glyma03g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKEGPNWDGLLKWSIAHSDGTSPTRNLSEEDRKWFMEAMQAQTIDVVKRMKEITLVMQTPEQVLKDQGVTPADIEDMLEELQEHVESIDMANDLHSIGGLVPLLGYLKNSHANIRAMAADVVTTIVQNNPRSQQLVMEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKPGITAFRLANGYAALKDALASENVRFQRKALNLIHYLLHENNSDCNIVNELGFPRMLMHLASSEDSDVREAALRGLLQLAHNAKDGKDGNEKDSVKIKQLLQERINNISLMSAEDLGVVREERQLVDSLWSTCFNEPSSLREKGLLVLPGEDVPPPDVASKYFEPPLRSSTANPSSKKDPEKNEIPLLLGSGPSPTYTNNQGSNKGDASS* >Glyma03g17870.2 sequence type=predicted peptide gene model=Glyma03g17870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKEGPNWDGLLKWSIAHSDGTSPTRNLSEEDRKWFMEAMQAQTIDVVKRMKEITLVMQTPEQVLKDQGVTPADIEDMLEELQEHVESIDMANALIRHNKPGITAFRLANGYAALKDALASENVRFQRKALNLIHYLLHENNSDCNIVNELGFPRMLMHLASSEDSDVREAALRGLLQLAHNAKDGKDGNEKDSVKIKQLLQERINNISLMSAEDLGVVREERQLVDSLWSTCFNEPSSLREKGLLVLPGEDVPPPDVASKYFEPPLRSSTANPSSKKDPEKNEIPLLLGSGPSPTYTNNQGSNKGDASS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
