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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18870 | AT | Annotation by Michelle Graham. TAIR10: isochorismate synthase 2 | chr1:6515486-6519176 FORWARD LENGTH=562 | SoyBase | E_val: 0 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0042372 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phylloquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0008909 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isochorismate synthase activity | SoyBase | N/A | ISS |
| KOG1223 | KOG | Isochorismate synthase | JGI | ISS | |
| PTHR11236 | Panther | AMINOBENZOATE/ANTHRANILATE SYNTHASE | JGI | ISS | |
| PTHR11236:SF3 | Panther | ISOCHORISMATE SYNTHASE | JGI | ISS | |
| PF00425 | PFAM | chorismate binding enzyme | JGI | ISS | |
| UniRef100_G7JQL8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isochorismate synthase n=1 Tax=Medicago truncatula RepID=G7JQL8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J709 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J709_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g17420 not represented in the dataset |
Glyma03g17420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g25690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g070600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g17420.2 sequence type=transcript gene model=Glyma03g17420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTATTTCCTTCCTATCCCCTTCACTTTTGTTTCCACAGTACAAGCCACCATTTTTTCTTCCTTTTCTTCTCTTTTAAACTCACTCCGTCTCTCTCTCTCTCTCTCATGCTCCCTCACTCATAAACTCATTCATGGCAATGGCCACGGTTCACAAGTGGCTCACTCATTTCTACGACACCAAAAAATGCAGCAACATCCTCGTACCTCTTGGTTCCAAGGGACAGCAATCCATGTACTTCCTCCACTATCATAGACCCCATCATAGATGCTACCTTTCAATGAACGGTTGCAGAGAGGGACAACACCAACATGCAAGAACAAGGAACAACCCTGTTGGGACCATAGAAACCAGAACCTTGGCAGCAGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCGGAGCTTAAATCGGATGCTCTGTTTGGTACCTCTTCGGGCATTGTAAGGGTGCAGGTTCCAATTGAAGAGCAAGTTGAAGCCATTGATTGGCTCCATTCGCAGAACCATCTTCTGCTTCCTCGCTGCTTCTTCTTTGGAAGGAAACAGTGCAGTAGTCCCTGCTGCATTAATGGTGAAGAAAAGTTGGTCAGTGTTGCTGGGGTTGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCCTACTGGGATTGGATATCTATAAGAAGGTTTCTTTCTGAGAGATGCCCTTTAATCCGTGCATATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTTGAGTTCATTGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCCTGGGATAATGATCTTTCTTGGTCATGGGAAAATGCGATCAATGCACTCCAAGAAACACTTTGCAAAGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAACTCCTCCAACCTTAATATCAAGCAGCCAGAACATTCCTAGTAAAGTAGACTGGGATCTTGCTGTTAATAGAGCTTTGCAGATGATAGGGCAAAATGATTCCTTACTAACCAAGGTTGTGCTCGCTCGTAGCACTAGGGTGGTGCCTACTGTTGATATTGATCCTCTTGCATGGTTATCTTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAACCACCAAATGCACCAGCATTTATAGGAAACACACCAGAGCAACTATTTCACAGAAAATGTCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACAAGCACTAGATCTTCAAATCGAACTTGACTTACTTACCAGTCCAAAGGATGACATTGAGTTTACTATAGTGAGAGAAACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAAGGTTGTAATCAAGCCAGAGAAAATGATTAGAAAACTCTCCAGGATTCAACATTTATATTCTCAATTATCTGGCAGGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCTCTTCACCCGAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAGAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGCGAGTTTGCGGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTTGGTGCTTTTATATATGCTGGGACAGGGATAGTGGAAGGAAGCAATCCTTACTTGGAGTGGGATGAGCTAGAACTCAAGACATCTCAGTTCACCAAGTTGCTCAAGCTTGACTTGCTTCGGAGACAAAAAGTAGATTGTAAATGAGCTCCATCAACAGATACGGTTAGCATTGTTAAATGACTGAAAAAAATTATGCTGATTAAGTTCTTTAGTGGCATGTGTTAGGGATTGGTGATTGATGGTTTTTTGTATATCAACCG
>Glyma03g17420.1 sequence type=CDS gene model=Glyma03g17420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGGCCACGGTTCACAAGTGGCTCACTCATTTCTACGACACCAAAAAATGCAGCAACATCCTCGTACCTCTTGGTTCCAAGGGACAGCAATCCATGTACTTCCTCCACTATCATAGACCCCATCATAGATGCTACCTTTCAATGAACGGTTGCAGAGAGGGACAACACCAACATGCAAGAACAAGGAACAACCCTGTTGGGACCATAGAAACCAGAACCTTGGCAGCAGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCGGAGCTTAAATCGGATGCTCTGTTTGGTACCTCTTCGGGCATTGTAAGGGTGCAGGTTCCAATTGAAGAGCAAGTTGAAGCCATTGATTGGCTCCATTCGCAGAACCATCTTCTGCTTCCTCGCTGCTTCTTCTTTGGAAGGAAACAGTGCAGTAGTCCCTGCTGCATTAATGGTGAAGAAAAGTTGGTCAGTGTTGCTGGGGTTGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCCTACTGGGATTGGATATCTATAAGAAGGTTTCTTTCTGAGAGATGCCCTTTAATCCGTGCATATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTTGAGTTCATTGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCCTGGGATAATGATCTTTCTTGGTCATGGGAAAATGCGATCAATGCACTCCAAGAAACACTTTGCAAAGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAACTCCTCCAACCTTAATATCAAGCAGCCAGAACATTCCTAGTAAAGTAGACTGGGATCTTGCTGTTAATAGAGCTTTGCAGATGATAGGGCAAAATGATTCCTTACTAACCAAGGTTGTGCTCGCTCGTAGCACTAGGGTGGTGCCTACTGTTGATATTGATCCTCTTGCATGGTTATCTTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAACCACCAAATGCACCAGCATTTATAGGAAACACACCAGAGCAACTATTTCACAGAAAATGTCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACAAGCACTAGATCTTCAAATCGAACTTGACTTACTTACCAGTCCAAAGGATGACATTGAGTTTACTATAGTGAGAGAAACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAAGGTTGTAATCAAGCCAGAGAAAATGATTAGAAAACTCTCCAGGATTCAACATTTATATTCTCAATTATCTGGCAGGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCTCTTCACCCGAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAGAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGCGAGTTTGCGGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTTGGTGCTTTTATATATGCTGGGACAGGGATAGTGGAAGGAAGCAATCCTTACTTGGAGTGGGATGAGCTAGAACTCAAGACATCTCAGTTCACCAAGTTGCTCAAGCTTGACTTGCTTCGGAGACAAAAAGTAGATTGTAAATGA >Glyma03g17420.2 sequence type=CDS gene model=Glyma03g17420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGGCCACGGTTCACAAGTGGCTCACTCATTTCTACGACACCAAAAAATGCAGCAACATCCTCGTACCTCTTGGTTCCAAGGGACAGCAATCCATGTACTTCCTCCACTATCATAGACCCCATCATAGATGCTACCTTTCAATGAACGGTTGCAGAGAGGGACAACACCAACATGCAAGAACAAGGAACAACCCTGTTGGGACCATAGAAACCAGAACCTTGGCAGCAGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCGGAGCTTAAATCGGATGCTCTGTTTGGTACCTCTTCGGGCATTGTAAGGGTGCAGGTTCCAATTGAAGAGCAAGTTGAAGCCATTGATTGGCTCCATTCGCAGAACCATCTTCTGCTTCCTCGCTGCTTCTTCTTTGGAAGGAAACAGTGCAGTAGTCCCTGCTGCATTAATGGTGAAGAAAAGTTGGTCAGTGTTGCTGGGGTTGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCCTACTGGGATTGGATATCTATAAGAAGGTTTCTTTCTGAGAGATGCCCTTTAATCCGTGCATATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTTGAGTTCATTGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCCTGGGATAATGATCTTTCTTGGTCATGGGAAAATGCGATCAATGCACTCCAAGAAACACTTTGCAAAGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAACTCCTCCAACCTTAATATCAAGCAGCCAGAACATTCCTAGTAAAGTAGACTGGGATCTTGCTGTTAATAGAGCTTTGCAGATGATAGGGCAAAATGATTCCTTACTAACCAAGGTTGTGCTCGCTCGTAGCACTAGGGTGGTGCCTACTGTTGATATTGATCCTCTTGCATGGTTATCTTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAACCACCAAATGCACCAGCATTTATAGGAAACACACCAGAGCAACTATTTCACAGAAAATGTCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACAAGCACTAGATCTTCAAATCGAACTTGACTTACTTACCAGTCCAAAGGATGACATTGAGTTTACTATAGTGAGAGAAACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAAGGTTGTAATCAAGCCAGAGAAAATGATTAGAAAACTCTCCAGGATTCAACATTTATATTCTCAATTATCTGGCAGGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCTCTTCACCCGAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGATGCAGAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGCGAGTTTGCGGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTTGGTGCTTTTATATATGCTGGGACAGGGATAGTGGAAGGAAGCAATCCTTACTTGGAGTGGGATGAGCTAGAACTCAAGACATCTCAGTTCACCAAGTTGCTCAAGCTTGACTTGCTTCGGAGACAAAAAGTAGATTGTAAATGA
>Glyma03g17420.1 sequence type=predicted peptide gene model=Glyma03g17420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMATVHKWLTHFYDTKKCSNILVPLGSKGQQSMYFLHYHRPHHRCYLSMNGCREGQHQHARTRNNPVGTIETRTLAAVASPAMAMYSLNMAISELKSDALFGTSSGIVRVQVPIEEQVEAIDWLHSQNHLLLPRCFFFGRKQCSSPCCINGEEKLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFIELEGGSMLTITIAWDNDLSWSWENAINALQETLCKVSSSIVKFPKQTPPTLISSSQNIPSKVDWDLAVNRALQMIGQNDSLLTKVVLARSTRVVPTVDIDPLAWLSCLKVEGENAYQFLLQPPNAPAFIGNTPEQLFHRKCLHITSEALAGTRARGASQALDLQIELDLLTSPKDDIEFTIVRETIRRKLEAVCEKVVIKPEKMIRKLSRIQHLYSQLSGRLRSEEDEFEILSSLHPSPAVCGFPTEEAQLLIADAEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGAFIYAGTGIVEGSNPYLEWDELELKTSQFTKLLKLDLLRRQKVDCK* >Glyma03g17420.2 sequence type=predicted peptide gene model=Glyma03g17420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMATVHKWLTHFYDTKKCSNILVPLGSKGQQSMYFLHYHRPHHRCYLSMNGCREGQHQHARTRNNPVGTIETRTLAAVASPAMAMYSLNMAISELKSDALFGTSSGIVRVQVPIEEQVEAIDWLHSQNHLLLPRCFFFGRKQCSSPCCINGEEKLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFIELEGGSMLTITIAWDNDLSWSWENAINALQETLCKVSSSIVKFPKQTPPTLISSSQNIPSKVDWDLAVNRALQMIGQNDSLLTKVVLARSTRVVPTVDIDPLAWLSCLKVEGENAYQFLLQPPNAPAFIGNTPEQLFHRKCLHITSEALAGTRARGASQALDLQIELDLLTSPKDDIEFTIVRETIRRKLEAVCEKVVIKPEKMIRKLSRIQHLYSQLSGRLRSEEDEFEILSSLHPSPAVCGFPTEEAQLLIADAEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGAFIYAGTGIVEGSNPYLEWDELELKTSQFTKLLKLDLLRRQKVDCK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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