SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57190 | AT | Annotation by Michelle Graham. TAIR10: phosphatidylserine decarboxylase 2 | chr5:23171531-23175364 REVERSE LENGTH=635 | SoyBase | E_val: 5.00E-130 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0008654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0004609 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylserine decarboxylase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| PTHR10067 | Panther | PHOSPHATIDYLSERINE DECARBOXYLASE | JGI | ISS | |
| UniRef100_G7ILA2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylserine decarboxylase n=1 Tax=Medicago truncatula RepID=G7ILA2_MEDTR | SoyBase | E_val: 8.00E-164 | ISS |
| UniRef100_I1KUF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUF4_SOYBN | SoyBase | E_val: 4.00E-179 | ISS |
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Glyma03g17372 not represented in the dataset |
Glyma03g17372 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g071100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g17372.1 sequence type=CDS gene model=Glyma03g17372 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACTCTGATTCTGACGTTGAGGTATTCGACCTTTTAGATCCATCAATGCCTGGAAAAGTGGTTGACAACATTTCTATTTCATGCACTGTAGAGGATCCAATTGAAACGGAGAAAGGCTTCGTTAGACGCATTTTATCTATAGTGGGCTACAATGAACATGGGATGCTTTCACTTTCTGAATTTTTTGACCTAATTGATGCTTTTGGCAATCAAGTTGCAACTAGCAAGAATGAAGAGTTGTTCAAAGCAGCTGACAAAAATGGAGATGGTGTTGTGAGCATGGACGAGTTGGCCTCCCTTCTTACTTTTCATCAAGAACACTTCTGGTATTGCAAGGAACCATTATTGAATTGTTGTCCTGTGTGTGGTGAGGTTCTTCAGATTTCTGACCAGTTGAACAACATGATCCACTTAACTCTTTGTTTTGATGAAGGGACTGGTAACCAGGTGATGGCCGAAGGATTCTTGACAGATAAGCAGGCTTCATATGGGTGGTTCTTCAAACTGAGTGAATGGGCGCATTTCTCATCTTACGATGTTGGTATTCGATCTGGATCAAGTGCATCCCATATTCTGGTATATGATAGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCCATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCTTAATGGACATAGGGGTGAAGGAGCTCTTGCAAAGCATTTTTGAAAGGCAGGGAGCACGAATGGATTCACCTGAATCATCCATAGTTATACCAAAATTTATTGAATCTTTTAAGGATCAAATCAATTTGATTGAAGTCAAGTATCCACTGAAACACTTTAAGGTGGGTCAAACTTTGTTACGAGTTTAA
>Glyma03g17372.1 sequence type=predicted peptide gene model=Glyma03g17372 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high DSDSDVEVFDLLDPSMPGKVVDNISISCTVEDPIETEKGFVRRILSIVGYNEHGMLSLSEFFDLIDAFGNQVATSKNEELFKAADKNGDGVVSMDELASLLTFHQEHFWYCKEPLLNCCPVCGEVLQISDQLNNMIHLTLCFDEGTGNQVMAEGFLTDKQASYGWFFKLSEWAHFSSYDVGIRSGSSASHILVYDRKSQRLVEEIIDKKIVLSMRAIYQSKIGLGLMDIGVKELLQSIFERQGARMDSPESSIVIPKFIESFKDQINLIEVKYPLKHFKVGQTLLRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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