Glyma03g17330 - SoyBase

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Report for Sequence Feature Glyma03g17330

Feature Type:	gene_model
Chromosome:	Gm03
Start:	21954729
stop:	21959644
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g17330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56870	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 204 Blast hits to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). \| chr3:21053077-21055518 FORWARD LENGTH=700	SoyBase	E_val: 5.00E-39	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JM09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JM09_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q851G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q851G7_ORYSJ	SoyBase	E_val: 3.00E-28	ISS

Expression Patterns of Glyma03g17330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g17330

Paralog	Evidence	Comments
Glyma01g25782	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g17330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g071500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g17330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g17330

Limit To All Plant Sequences

>Glyma03g17330.1   sequence type=CDS   gene model=Glyma03g17330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATATGGAGCTACGGTGTTGTAGTCATCTTCATTTCATCCAGGCTATTAAAGGTGGTTTAGTTGCAAAAGTCCCGAATGTTGCTCGTGGACAACCTAAACTTAAATTTAAAAAGCTTGCTGACATATATGATGGCTTATTGTCTCATAATGATGATGGAATGGCTGAAAGATCATGCTTGGGTGAAATTGAGGAAAGCCCTTTTGAAACCAAGCCTGATGCTTCTGTATGTAATGTCAATGATGATAATGATCAGAGAATCATTAACTTGGATGATGACAACTTTGACAATTTCACCCTAAGCCAACTTAAAGCAAGTTGCAAAACAAGGAAGCGAAAACACTCACAAGGTCTCAACTCCTCTAAAATAAACATGAAAGTTGAAGATTCATCAATCCTGGAGGACTACAGAGAGGAGCAAATGGCAGCAGATGATTCTGATTTCCTGGAGACTATCAGTAGCTGGAAAACTAAACTATCAAAGAATATGAAGGCGAAGATTAGAAAGTGCTTTAAAGAACCAATCTCTACTCATACCAAAGATATCATGCTAGTTGTCAAATCTGAACCTGAAGAGATCCTAAACAGTCAAGAGTTCCCATCCTCTTGTGAGGAGATCCAAAACAGTCTAGAGTTCCCACCCTCTAGTGAAGAGATCCTAGATTGTCAAAAGTTCTCACCTTCTGGTGAAGAGATTCAAGACTGTCAAGAGTTCTCACCCTCCCTTGAAGCGATCCAAGGCAGTCAAGAGTTCCCACCCTATAGTGAAGAGATTGAAAACAATCAAGCGATCCCATTCTTTATTGAAGATTCAGTTGCCCTTGTTGAAGTAAAATCTGAGGTTCCTGAAACTGATTGTTATGGTGAGCCAGATGACTATTCTATTATTGAAAGCCAAGAAACTGAGATAATCCATGATTGGAATTTGGAGAATGAATTAAATGAGTGGCAGGAGCATGTTGATTTTATTCCGTTACGAATGGTGAGGCCATCTTGTATGGATATTGTGATAAATAATTCTCAACTAAGCAACGACCAGTCTCCATACATGCCTGCAATAGAATTTGAAAGTGAAGAATATATCACCAATCCAGATCTCCATTACATCTCCCCACAAGAAATCTCTCTGGTTGAAGATCATAACTCTGATATTCATGACAATCAACCTGACGGTGACACTGACACTGCTGTCTCACTACCAAATGCGGTTACTCATAAAGACCTTGACTGTAGTAATGATGAATTTACAACTGGTGCTAAGGATCAGGTAGAATGTATCTCTACTATTGAACATGACTGCAGTAATGATGAATTTACAGCTGGTGCTGAGGATCAGGTAGAACACAACTCTACTATTGAAAATGACTGCAGCAATGATGAATTTACAGCTGGTGCTGAGGATCAGGTAGAACCCAGCTCTACTATTGAACATGACTGCTGTAATGATGAATATAGTACAACTGGTGCTGAGGATCAGGTAGAGCTCAGCTCTACTATTGAACATGGCCCAAATCCTGATGGATGTCTGGTTCGTCACTCAGATGATCCACCTGAATATGAGGAGAAGCAATCATTTGCTTCTGTAAACATTGATGAGAAGAGACATGCCAATGTGGCTACTGATGAATTGACTTCTTGGGATGAATGTGATGGTAGTTCCAAGCTGCATTGTCCTGAAAAGCTATTATCAACCAGAAAGGCAATTTCACCATCTTCTGAGGAAAGGCTCTGTAAAGCCGTGGAGTCAGTTGATTTGAATCATAAAAAAAAATTGAAATGCAAGGGAAAACTGTACTTTTCTGAGAAGACTGATAAGATGAATGGTACAGATGAAGGGTTTGATGATATCACAGGAACTCGACCTAATGATATCCCCAACAAAATTAGTGTTATTCCTAGGAATAAAAGAGTTTCCCATCCTAGAGGAATTTCCAAGGTTCCTCATTCTTCTCGCCATGCAACCCGCATAGGGTGCAACTCTGTACAGAGTTGCTCAAAGAGTGCAATTGCATTTACACAGCAGCAGATGCATGATGCAGAATGCCTTGCCATGAGACTCACTAAGGAATTGAAGTCAATGAAGGACATTGTGGATGATATGTTACGATCTGAATTCTGTCTAAATACATCTTTGAGACATAAAGTAAATGAGGCAAGAATGGCTGTTAAGAATGCCACAAGAGCTGAAGAAGCTACAAAACGATGTCTGGCCTTCATGTCAAGGGATTGCAGCCGTTTCTGTAAAATAATGAAATTAACTGATGATGGTCCATCTCCTCAAAAACCTCCTCAAGAAGTAGTGCGTAAAGAGAGGAAGAAAATAGCCTTTGCTGATGAAGCAGGTGGAAAGCTGTGCCAGGTTAAGTTCTATGAGGATGCGCAGTATCTGTCAGAATCTAATTGA

Predicted protein sequences of Glyma03g17330

Limit To All Plant Sequences

>Glyma03g17330.1   sequence type=predicted peptide   gene model=Glyma03g17330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHMELRCCSHLHFIQAIKGGLVAKVPNVARGQPKLKFKKLADIYDGLLSHNDDGMAERSCLGEIEESPFETKPDASVCNVNDDNDQRIINLDDDNFDNFTLSQLKASCKTRKRKHSQGLNSSKINMKVEDSSILEDYREEQMAADDSDFLETISSWKTKLSKNMKAKIRKCFKEPISTHTKDIMLVVKSEPEEILNSQEFPSSCEEIQNSLEFPPSSEEILDCQKFSPSGEEIQDCQEFSPSLEAIQGSQEFPPYSEEIENNQAIPFFIEDSVALVEVKSEVPETDCYGEPDDYSIIESQETEIIHDWNLENELNEWQEHVDFIPLRMVRPSCMDIVINNSQLSNDQSPYMPAIEFESEEYITNPDLHYISPQEISLVEDHNSDIHDNQPDGDTDTAVSLPNAVTHKDLDCSNDEFTTGAKDQVECISTIEHDCSNDEFTAGAEDQVEHNSTIENDCSNDEFTAGAEDQVEPSSTIEHDCCNDEYSTTGAEDQVELSSTIEHGPNPDGCLVRHSDDPPEYEEKQSFASVNIDEKRHANVATDELTSWDECDGSSKLHCPEKLLSTRKAISPSSEERLCKAVESVDLNHKKKLKCKGKLYFSEKTDKMNGTDEGFDDITGTRPNDIPNKISVIPRNKRVSHPRGISKVPHSSRHATRIGCNSVQSCSKSAIAFTQQQMHDAECLAMRLTKELKSMKDIVDDMLRSEFCLNTSLRHKVNEARMAVKNATRAEEATKRCLAFMSRDCSRFCKIMKLTDDGPSPQKPPQEVVRKERKKIAFADEAGGKLCQVKFYEDAQYLSESN*

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