SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49660 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:18413690-18415223 FORWARD LENGTH=317 | SoyBase | E_val: 2.00E-13 | ISS |
| GO:0007186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0048188 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Set1C/COMPASS complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0042393 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone binding | SoyBase | N/A | ISS |
| KOG0316 | KOG | Conserved WD40 repeat-containing protein | JGI | ISS | |
| PTHR13083 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7IDV8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IDV8_MEDTR | SoyBase | E_val: 2.00E-177 | ISS |
| UniRef100_UPI000233C7B2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C7B2 related cluster n=1 Tax=unknown RepID=UPI000233C7B2 | SoyBase | E_val: 0 | ISS |
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Glyma03g16916 not represented in the dataset |
Glyma03g16916 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g072900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g16916.1 sequence type=CDS gene model=Glyma03g16916 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGACATTTTTGGGGCACACTGGTCCAATCAGTCGGTGTTGCTTCTCTGCATCTGGAAACAATATTGCCAGTGCTTCTCTGGATGGAACTATCATGATATGGACATATGATACATCAACTCCAGTGTCTAGAAATGCAACCATATATTGCGGCACTGAAATTTTGTCACTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTTATAGGTACATCCGATGGGTGCATTAAGGCATGGAATGTGGATGCAAAGAGAGTTGTCTGTGACCTCAACACAACCGAAGCATTTCCAAGTGTATTGGACATAAAGTGCATTCCTGTGGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGGGCTGGTTCTAACTATATTGACAACTTGGGTTTTGCTTCACTTACTGTGTGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTGGCAGCTTCTGCCGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCTGCACATGATTCTTCCATCAGTTCAATTCTGTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTCTGATGGGAAGATTTTTGAGTGGAGTTTGCAAAATCAAGGTCAAATCCTGTGGTCGAGAGACTCTAGTAGGTTTTGTTACCCCCTCAATGACTCAAAATATTGCAGACATGAGATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCATTTAGAGCACCCATATACCAGGTTGATGATTCGTGGTGA
>Glyma03g16916.1 sequence type=predicted peptide gene model=Glyma03g16916 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ETFLGHTGPISRCCFSASGNNIASASLDGTIMIWTYDTSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCIPVEPIFVSAAASGGAGSNYIDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDSSRFCYPLNDSKYCRHEMALDANGRRLLVTSSSFRAPIYQVDDSW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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