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Report for Sequence Feature Glyma03g16890

Feature Type:gene_model
Chromosome:Gm03
Start:21338588
stop:21339091
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g16890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09280AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2850920-2851258 REVERSE LENGTH=112 SoyBaseE_val: 4.00E-12ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JLZ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLZ8_SOYBN SoyBaseE_val: 7.00E-116ISS
UniRef100_Q9SR35UniRef Annotation by Michelle Graham. Most informative UniRef hit: F3L24.15 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SR35_ARATH SoyBaseE_val: 2.00E-09ISS

Expression Patterns of Glyma03g16890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g16890
ParalogEvidenceComments
Glyma01g25916 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g16890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g073100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g16890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g16890
>Glyma03g16890.1   sequence type=CDS   gene model=Glyma03g16890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCAAGTTTCTTTTCTTGTTCTTTCTTTTAGCAAATCCCCTTTTGAGTCTAACCAATGCTACAAGCCAACCTCAAATCATTTTCCAATCTCTTTCAGCACCATCTTCAAACCCTCCTGCTCAGAGTCCTTCTATTGGCCAAAGACCACACACATCAGAACCCTCTATTGGAAGGAAACTTGGTAAGCACCAACATAACCAAATCAGGTCCTCTGACACTAAAAGTCCTACCCCATCTGAAGCACCACAAAATGAAAAGAATATGCACTCTATTTCTGAAGGGAGCATTCCTAGTCATCAGAGAACTTCTATTGAACCACATGATGAAGCTGTTTTGGGTTCTCATCATGGTCAGGTCCATTTGTTGAAGCACCGCCACCACCATTCCAAGTCCATTGCTGGAGCAGGAGTCATTCTTGCAGGGCTTGCAGCCACATTTTTAGTGTCAGTTTTCTGTTATATAAGAGCTACTAGAAGGAACAAGATAGAAACAACAGCTTAG
Predicted protein sequences of Glyma03g16890
>Glyma03g16890.1   sequence type=predicted peptide   gene model=Glyma03g16890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKFLFLFFLLANPLLSLTNATSQPQIIFQSLSAPSSNPPAQSPSIGQRPHTSEPSIGRKLGKHQHNQIRSSDTKSPTPSEAPQNEKNMHSISEGSIPSHQRTSIEPHDEAVLGSHHGQVHLLKHRHHHSKSIAGAGVILAGLAATFLVSVFCYIRATRRNKIETTA*






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