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Report for Sequence Feature Glyma03g16620

Feature Type:gene_model
Chromosome:Gm03
Start:21125078
stop:21126488
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53980AT Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:19987760-19988203 REVERSE LENGTH=114 SoyBaseE_val: 3.00E-43ISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0008289GO-mf Annotation by Michelle Graham. GO Molecular Function: lipid binding SoyBaseN/AISS
PF00234PFAM Protease inhibitor/seed storage/LTP family JGI ISS
UniRef100_G7L5L7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protease inhibitor/seed storage/LTP family protein n=1 Tax=Medicago truncatula RepID=G7L5L7_MEDTR SoyBaseE_val: 2.00E-54ISS
UniRef100_I1JLZ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLZ2_SOYBN SoyBaseE_val: 3.00E-92ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g16620 not represented in the dataset

Glyma03g16620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g25980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g073500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g16620.3   sequence type=transcript   gene model=Glyma03g16620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACTGATTGAGAGAAAAATAATGGAGGCTTACACTAAGGTTGTTTGCATTCTTGGACTTTTAATTTTTGTAAGCATTTCAGATATTCATAGAGTGGAGGGTGCAGGGGAATGTGGGAGGTCTACTACTCCAGATAATGAAGCAATAAAGCTTATTCCTTGTGTCTCTGCCGCAAAAGATGAAAATGTTAAAGTTACTAAGAATTGCTGTGCTCAGATCGAGAAACTTGGCAAGAACCCTAGTTGTCTATGTGCTGTTATGCTCTCCAACACAGCAAAAATGTCTGGAGCCGATCCTAAGGTTGCCATAACCATCCCAAAACGCTGCAACCTTGCTAATCGCCCTGTTGGTTACAAGTGTGGACCTGATTTTTGCAGCTTACACTCTTCCTTAAGATAGTACTGAGGACAAGGAGGGATTTGGGCGTGAAGGCACAAAAGCTGTTGGCTACAACTGTGACTACAAAACTATGTTTTATTGTCCTTGAAACAATTTGATCAATAATGGCAAGTAGCTATATGGTGTTCTTCCTGAATAAAACTAGAAATTTTAATGTTTAATGTTTCTATTCCTATTTAATATATTAACATCTACCTTTTCTCTGTTTTTT

>Glyma03g16620.2   sequence type=CDS   gene model=Glyma03g16620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATCAGAAGTAGGGGTGTTTGTCACACTGATTGAGAGAAAAATAATGGAGGCTTACACTAAGGTTGTTTGCATTCTTGGACTTTTAATTTTTGTAAGCATTTCAGATATTCATAGAGTGGAGGGTGCAGGGGAATGTGGGAGGTCTACTACTCCAGATAATGAAGCAATAAAGCTTATTCCTTGTGTCTCTGCCGCAAAAGATGAAAATGTTAAAGTTACTAAGAATTGCTGTGCTCAGATCGAGAAACTTGGCAAGAACCCTAGTTGTCTATGTGCTGTTATGCTCTCCAACACAGCAAAAATGTCTGGAGCCGATCCTAAGGTTGCCATAACCATCCCAAAACGCTGCAACCTTGCTAATCGCCCTGTTGGTTACAAGTGTGGACCTTACACTCTTCCTTAA

>Glyma03g16620.3   sequence type=CDS   gene model=Glyma03g16620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCTTACACTAAGGTTGTTTGCATTCTTGGACTTTTAATTTTTGTAAGCATTTCAGATATTCATAGAGTGGAGGGTGCAGGGGAATGTGGGAGGTCTACTACTCCAGATAATGAAGCAATAAAGCTTATTCCTTGTGTCTCTGCCGCAAAAGATGAAAATGTTAAAGTTACTAAGAATTGCTGTGCTCAGATCGAGAAACTTGGCAAGAACCCTAGTTGTCTATGTGCTGTTATGCTCTCCAACACAGCAAAAATGTCTGGAGCCGATCCTAAGGTTGCCATAACCATCCCAAAACGCTGCAACCTTGCTAATCGCCCTGTTGGTTACAAGTGTGGACCTGATTTTTGCAGCTTACACTCTTCCTTAAGATAG

>Glyma03g16620.2   sequence type=predicted peptide   gene model=Glyma03g16620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSEVGVFVTLIERKIMEAYTKVVCILGLLIFVSISDIHRVEGAGECGRSTTPDNEAIKLIPCVSAAKDENVKVTKNCCAQIEKLGKNPSCLCAVMLSNTAKMSGADPKVAITIPKRCNLANRPVGYKCGPYTLP*

>Glyma03g16620.3   sequence type=predicted peptide   gene model=Glyma03g16620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAYTKVVCILGLLIFVSISDIHRVEGAGECGRSTTPDNEAIKLIPCVSAAKDENVKVTKNCCAQIEKLGKNPSCLCAVMLSNTAKMSGADPKVAITIPKRCNLANRPVGYKCGPDFCSLHSSLR*







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