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Report for Sequence Feature Glyma03g16600

Feature Type:gene_model
Chromosome:Gm03
Start:21083294
stop:21085380
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g16600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09270AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224 SoyBaseE_val: 1.00E-91ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
KOG0406 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF56Panther SUBFAMILY NOT NAMED JGI ISS
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_Q9FQE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 13 n=1 Tax=Glycine max RepID=Q9FQE5_SOYBN SoyBaseE_val: 1.00E-156ISS
UniRef100_Q9FQE5UniRef Annotation by Michelle Graham. Best UniRef hit: Glutathione S-transferase GST 13 n=1 Tax=Glycine max RepID=Q9FQE5_SOYBN SoyBaseE_val: 1.00E-156ISS

Expression Patterns of Glyma03g16600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g16600
ParalogEvidenceComments
Glyma01g26220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g16600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g107500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g16600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g16600
>Glyma03g16600.1   sequence type=CDS   gene model=Glyma03g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATATCATGAAGAAGAAGTGAGGCTATTGGGCAAGTGGGCCAGCCCATTTAGCAACAGAGTAGACCTTGCTCTCAAGCTCAAGGGTGTTCCCTACAAATACTCCGAGGAAGATCTTGCTAACAAGAGTGCTGATCTTCTCAAGTACAACCCCGTTCACAAGAAGGTTCCGGTTTTGGTCCACAATGGGAACCCATTGCCCGAGTCACTCATCATTGTTGAATACATAGATGAGACGTGGAAAAATAACCCACTATTGCCTCAAGACCCATATGAAAGAGCCTTGGCTCGTTTTTGGTCTAAGACCTTAGATGACAAGATCTTGCCAGCTATATGGAATGCTTGCTGGAGTGACGAGAATGGGCGTGAGAAAGCAGTGGAGGAAGCCTTGGAAGCATTGAAAATCCTACAGGAAACACTGAAAGACAAGAAATTCTTTGGAGGAGAGAGCATAGGATTGGTAGATATTGCTGCCAATTTCATTGGGTATTGGGTTGCCATATTGCAAGAGATTGCAGGGTTGGAATTGCTCACCATTGAGAAATTTCCAAAGTTATATAATTGGAGTCAAGACTTCATCAACCACCCTGTGATCAAGGAGGGTCTGCCTCCTAGAGATGAATTGTTTGCTTTCTTCAAAGCTTCTGCTAAAAAGTAG
Predicted protein sequences of Glyma03g16600
>Glyma03g16600.1   sequence type=predicted peptide   gene model=Glyma03g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASYHEEEVRLLGKWASPFSNRVDLALKLKGVPYKYSEEDLANKSADLLKYNPVHKKVPVLVHNGNPLPESLIIVEYIDETWKNNPLLPQDPYERALARFWSKTLDDKILPAIWNACWSDENGREKAVEEALEALKILQETLKDKKFFGGESIGLVDIAANFIGYWVAILQEIAGLELLTIEKFPKLYNWSQDFINHPVIKEGLPPRDELFAFFKASAKK*






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