Glyma03g16563 - SoyBase

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Report for Sequence Feature Glyma03g16563

Feature Type:	gene_model
Chromosome:	Gm03
Start:	21074423
stop:	21078977
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g16563

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09270	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 8 \| chr3:2848407-2849226 REVERSE LENGTH=224	SoyBase	E_val: 3.00E-79	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG0406	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF16	Panther	GLUTATHIONE S-TRANSFERASE THETA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1J727	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J727_SOYBN	SoyBase	E_val: 1.00E-153	ISS
UniRef100_Q9FQF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 7 n=1 Tax=Glycine max RepID=Q9FQF1_SOYBN	SoyBase	E_val: 1.00E-97	ISS

Expression Patterns of Glyma03g16563

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g16563 not represented in the dataset	Glyma03g16563 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g16563

Paralog	Evidence	Comments
Glyma01g26230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g16563 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g107600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g16563

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g16563

Limit To All Plant Sequences

>Glyma03g16563.2   sequence type=transcript   gene model=Glyma03g16563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAGGCTTAATATCCAATTTTCAACTTTTCAAGGGGGGCGTGACACCCCACTTCGTGTAACACTTCCCATCATGAGTTAAAACCATTTAAAACCATGCATAGGCCACATTCATAGTTGTAGAGAAGCTTGCAATGGCCAAAGACTATGGAGAAGTTGAGTTGTTTGGTGTAGGTGGAAGCCCTTTTGCCAGAAGGGTGCAGATTGCCCTAGAACTGAAGGGAGTTCAATACACTTACTTTGAAGAAGATCTTAGGAACAAGAGTGCTCTTCTTCTCAAATACAACCCTGTTCACAAGAAGGTGCCTGTGCTTGTCCACAATGGAAGACCCTTGGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAGACATGGGAGAACCACCACCCCATCTTGCCTCAACAACCTTATGATAGAGCCTTGGCTCGATTCTGGTCAAGGTACATTGATGACAAATGCCTGCCTGCAATATCAAAGGCAGCATTTACTGTAGACAAGGAGGAACGTGACAAGGGCACTGAGGAATCACTCGAGTCTCTTCAAATTCTTGAGAATGAGCTCAAACACAAGTTCTTTGGAGGAGAGACTATAGACATAGTGGACATAGCCGCTGGTTTCATAGCTTTCTGGCTCCCTGCAATTGAAGAGGCTGTTGGGTTGAAATTGCTGACCAATGAGAAGTTTCCAAAACTCTACAAATGGGGTGAAGACTACACCAACCACCCTATTGTGAAAAAGAATCTTCCCCAAAGAGATAGGCTTGTGGGGTTCTTCAAAGCTCGATATGCATCATCCAACACTGCTTCCAAATAGACCAATTGTGGGTGTGATAGAGACTCATGATTTGGGGAAATTGTTGTGTAATAAATCTTGTAATGAGTAAGTGGCTTCTTGAGGGAGGATCTACATGATGGAATTATCTAATTCATTTTCTTATGCCTATATACAAGATAAAATTTCTTAATTCATTAAAATTAAGAAAAATGGTTAATTTAGTTGATAGTAATAAATTTGTCTTAAATTTATAATTTTTTAAA

Coding sequences of Glyma03g16563

Limit To All Plant Sequences

>Glyma03g16563.1   sequence type=CDS   gene model=Glyma03g16563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGACTATGGAGAAGTTGAGTTGTTTGGTGTAGGTGGAAGCCCTTTTGCCAGAAGGGTGCAGATTGCCCTAGAACTGAAGGGAGTTCAATACACTTACTTTGAAGAAGATCTTAGGAACAAGAGTGCTCTTCTTCTCAAATACAACCCTGTTCACAAGAAGGTGCCTGTGCTTGTCCACAATGGAAGACCCTTGGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAGACATGGGAGAACCACCACCCCATCTTGCCTCAACAACCTTATGATAGAGCCTTGGCTCGATTCTGGTCAAGGTACATTGATGACAAATGCCTGCCTGCAATATCAAAGGCAGCATTTACTGTAGACAAGGAGGAACGTGACAAGGGCACTGAGGAATCACTCGAGTCTCTTCAAATTCTTGAGAATGAGCTCAAACACAAGTTCTTTGGAGGAGAGACTATAGACATAGTGGACATAGCCGCTGGTTTCATAGCTTTCTGGCTCCCTGCAATTGAAGAGGCTGTTGGGTTGAAATTGCTGACCAATGAGAAGTTTCCAAAACTCTACAAATGGGGTGAAGACTACACCAACCACCCTATTGTGAAAAAGAATCTTCCCCAAAGAGATAGGCTTGTGGGGTTCTTCAAAGCTCGATATGCATCATCCAACACTGCTTCCAAATAG

>Glyma03g16563.2   sequence type=CDS   gene model=Glyma03g16563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGACTATGGAGAAGTTGAGTTGTTTGGTGTAGGTGGAAGCCCTTTTGCCAGAAGGGTGCAGATTGCCCTAGAACTGAAGGGAGTTCAATACACTTACTTTGAAGAAGATCTTAGGAACAAGAGTGCTCTTCTTCTCAAATACAACCCTGTTCACAAGAAGGTGCCTGTGCTTGTCCACAATGGAAGACCCTTGGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAGACATGGGAGAACCACCACCCCATCTTGCCTCAACAACCTTATGATAGAGCCTTGGCTCGATTCTGGTCAAGGTACATTGATGACAAATGCCTGCCTGCAATATCAAAGGCAGCATTTACTGTAGACAAGGAGGAACGTGACAAGGGCACTGAGGAATCACTCGAGTCTCTTCAAATTCTTGAGAATGAGCTCAAACACAAGTTCTTTGGAGGAGAGACTATAGACATAGTGGACATAGCCGCTGGTTTCATAGCTTTCTGGCTCCCTGCAATTGAAGAGGCTGTTGGGTTGAAATTGCTGACCAATGAGAAGTTTCCAAAACTCTACAAATGGGGTGAAGACTACACCAACCACCCTATTGTGAAAAAGAATCTTCCCCAAAGAGATAGGCTTGTGGGGTTCTTCAAAGCTCGATATGCATCATCCAACACTGCTTCCAAATAG

Predicted protein sequences of Glyma03g16563

Limit To All Plant Sequences

>Glyma03g16563.1   sequence type=predicted peptide   gene model=Glyma03g16563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDYGEVELFGVGGSPFARRVQIALELKGVQYTYFEEDLRNKSALLLKYNPVHKKVPVLVHNGRPLAESLVILEYIDETWENHHPILPQQPYDRALARFWSRYIDDKCLPAISKAAFTVDKEERDKGTEESLESLQILENELKHKFFGGETIDIVDIAAGFIAFWLPAIEEAVGLKLLTNEKFPKLYKWGEDYTNHPIVKKNLPQRDRLVGFFKARYASSNTASK*

>Glyma03g16563.2   sequence type=predicted peptide   gene model=Glyma03g16563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDYGEVELFGVGGSPFARRVQIALELKGVQYTYFEEDLRNKSALLLKYNPVHKKVPVLVHNGRPLAESLVILEYIDETWENHHPILPQQPYDRALARFWSRYIDDKCLPAISKAAFTVDKEERDKGTEESLESLQILENELKHKFFGGETIDIVDIAAGFIAFWLPAIEEAVGLKLLTNEKFPKLYKWGEDYTNHPIVKKNLPQRDRLVGFFKARYASSNTASK*

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