SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54010 | AT | Annotation by Michelle Graham. TAIR10: FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr3:20001042-20005063 FORWARD LENGTH=635 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0018208 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification | SoyBase | N/A | ISS |
| GO:0030010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: establishment of cell polarity | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0042761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005528 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FK506 binding | SoyBase | N/A | ISS |
| KOG0543 | KOG | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PTHR10516 | Panther | FK506 BINDING PROTEIN | JGI | ISS | |
| PTHR10516:SF70 | Panther | PAS1 (PASTICCINO 1) (FK506 BINDING / PEPTIDYL-PROL | JGI | ISS | |
| PF00254 | PFAM | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PF07719 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_B9SQB6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fk506 binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQB6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JLY3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLY3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g16440 not represented in the dataset |
Glyma03g16440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g26350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g108100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g16440.1 sequence type=CDS gene model=Glyma03g16440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCAAATGAAGATGCTGTACAGGAATTTACACCAAAGAAGAAGCCACCTTCAGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTAATGAAAGCTTTGATGAGGCCTGGTGGGGGTGATGCTGGACCTTCTGATGGTGACCAGATTATCTATCACTGCACAATTCGGACTTTGGATGGAGTACTTGTGGAATCTACCAGATCAGATTATGGAGGCAAGGGCATCCCAATAAGACATGTTTTGGGCAAAAGCAAGATGTTATTGGGATTGCTAGAAGGAATTCCATCAATGTTGAAAGGCGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGTCCTGTTTCTGCTCCTGATGGTTTTCCTAAGGATGATGAACTTCATTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGTTGTTACTGATGATTTGGGAGTTGTGAAAAAGGTAGAATGTGAAGGGCAGGGCTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTTGATTTCAGCAAAGACAGTTACTGGGAAATTGATAATGTCACATATGGAAGGAGAACCATACTTCTTTACTTTTGGAAAATCAGAGGTACCTAAAGGCCTTGAAATGGCGATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTCACCAGTCAGTATTTGACTGAGTCTCCTCTGATGCCTGTAATAGAAGGTTACGATGAAGTCCATTTTGAAGTGGAGCTGGTTCACTTTATTCAGGTGAGAGACATGCTTGGAGATGGGCGCCTAATAAAACGCCGAATTCGTGATGGGAAAGGTGATTTTCCAATGGATTGTCCCCTTCATGACAGTCTGCTTCGCGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGGGTATTCTATGATACAAGGGTAGACAATGATAGTCAGCCATTGGAGTTCTGTTCTGGAGAAGGGCTTGTACCAGAGGGATTTGAAATGAGTGTTCGTTTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCGAGGCCATTAAATGTCCCTGAGGGTGCTCATATTCAGTGGGAAATTGAGCTTCTAGGTTTTGAAACGCCAAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGAATGAAGCTGAAAACATCAGAAATACGGGTAACAGGCTGTTCAAAGAAGGAAAATATGAACTTGCCAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGAAGAAGGAAAAGTTTTTGCTGACACACGCAATTTGCTGCACCTGAATGTTGCTGCATGCCATCTAAAATTGGGAGAATGCAAAAAGTCCATTGAGACTTGCAATAAGGTTTTGGAAGCAAATCCTGCACATGTCAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGCTGCTGGAGATTTTGAAGAAGCGAGGGCTGATTTCAAAGTGATGATGAAAGTCGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTCAAAAACTGAAGCAGAAGGAACAGGATGTTGAGAAGAAAGCTAGGAAACAATTTAAAGGGCTATTTGACAAGAAGCCGGGAGAGATTTCAGAAGCTAAAGCTGATGTAGATGGAGATCAGATCACAAGTGAAAGCCAGAAGGACGATGAAGTACATGGGGACTCTGATGGAACAAATTCAGAGGACTCACATGAAGCTCCACCTGAGGCACAACGAACGGGTTGGTTCTCACTCTTTTGGCCTTCTGGCAGAAGACTTTTTGAATCTCTTGGGATTAATAGATGTACCATACTTTAA
>Glyma03g16440.1 sequence type=predicted peptide gene model=Glyma03g16440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAANEDAVQEFTPKKKPPSEDEKRKKKIVPGSLMKALMRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESTRSDYGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKDDELHFEIELIEFFKAKVVTDDLGVVKKVECEGQGWESPREPYEVKALISAKTVTGKLIMSHMEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDTRVDNDSQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPLNVPEGAHIQWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFADTRNLLHLNVAACHLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAYMAAGDFEEARADFKVMMKVDKSTESDATAALQKLKQKEQDVEKKARKQFKGLFDKKPGEISEAKADVDGDQITSESQKDDEVHGDSDGTNSEDSHEAPPEAQRTGWFSLFWPSGRRLFESLGINRCTIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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