Glyma03g15810 - SoyBase

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Report for Sequence Feature Glyma03g15810

Feature Type:	gene_model
Chromosome:	Gm03
Start:	20096722
stop:	20107995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g15810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09230	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 1 \| chr3:2833460-2835134 FORWARD LENGTH=393	SoyBase	E_val: 3.00E-111	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_E5RT69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor (Fragment) n=1 Tax=Lupinus albus RepID=E5RT69_LUPAL	SoyBase	E_val: 1.00E-158	ISS
UniRef100_I1JLW1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JLW1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g15810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g15810

Paralog	Evidence	Comments
Glyma01g26650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g15810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U027500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g15810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g15810

Limit To All Plant Sequences

>Glyma03g15810.2   sequence type=transcript   gene model=Glyma03g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAGGAGGGAAATTTGGCATGTGAGTCTATTACAAAGGAAGGACACGTGGCTAATGATCCGCATGTGGGGGTCAAAAAGAGCACACGCGTTAGGAGGGAGAATATAAGGCTGCGTGAATACTCACTTTGAGGCATGTTGAAGATGAGGAGGACCAGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCGATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGGACATGATACGATTAAATTAGAATCTGGCAGCTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCAGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTATGGAGATCATGGATGATAAATCTGATGGCAAAGCACAAACTGAGGGTCAATTACACCATGAAGTCAAGGACCCACCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCTTTTAATGTATACCACTCATTTGATGGTACGCAGCCTTCAACATCAATTCCAAGATCTGTTTCAATGCAAGGACCCGTTTTACAATCATCAAAACCAGATATGGAATTTTATAGAGCGCTTGAAGGAATTTTTGGTGACCAGTCAGTGCCTCACCAGTGTGGCCATGGCTGCTGTGCTGCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCTCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAGTAGTAGTGTCAAAATAATGGGCAACACCTCTGGCAGGGTAGTATCTAATGGATCTCAAGTACATATTGGCCATTAAAGTGCCAAATAGATCATCATTCCTATTCTGAGTGAGGACTGGATAATGGGTATGATAAAGGCTTTAGTAATGACAATCTATTTTCCTTCCAAATGTAATTAGGCAATCAAAGTTATGTGAATCACTGCTATAATGTAAATGGATTCACTAGGTAAAAGGAGGTTCATAAGTTCAAGGAACAATTATTTTGTTTTTTGGGGTGTTGACTGATTAGGACTTGATTTGGGACCCTGTAATTGCTAAAATGTTCGTCGTAAAATAGGCCAATAGGGTAAAATTACTTGCATATCAGTCAGTTCGAGTTGCTGCTGTGATGCTGTTCACTTTCTAAGAGTAAAACTCATTTATGTTAAAAGGCAATTGCAGCTTAGAGAAATCAGAAGAGTTATTGTTTTCTGTTGTGAATGGCCTAGGCTTTACTAATGTT

Coding sequences of Glyma03g15810

Limit To All Plant Sequences

>Glyma03g15810.1   sequence type=CDS   gene model=Glyma03g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCGGAAGAAACCGCCGCCGCCGCCGCCGACGGAAGCGGCGACGAGGGGCTGCTCGGGCTAGACAGCGGCAGCGGCGGCGGTGGAAGGGACAGAGTGAAGGGTCCATGGTCGCCGGAAGAGGACGTCATTCTGAGCCGTCTGGTGAGCAAGTTCGGCGCGAGAAATTGGAGCCTCATCGCGCGCGGGATCAGCGGAAGATCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAACCAGCTCGATCCCGCAGTCAAGCGCAAACCCTTCACCGATGAGGAGGACCAGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCGATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGGACATGATACGATTAAATTAGAATCTGGCAGCTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCAGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTATGGAGATCATGGATGATAAATCTGATGGCAAAGCACAAACTGAGGGTCAATTACACCATGAAGTCAAGGACCCACCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCTTTTAATGTATACCACTCATTTGATGGTACGCAGCCTTCAACATCAATTCCAAGATCTGTTTCAATGCAAGGACCCGTTTTACAATCATCAAAACCAGATATGGAATTTTATAGAGCGCTTGAAGGAATTTTTGGTGACCAGTCAGTGCCTCACCAGTGTGGCCATGGCTGCTGTGCTGCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCTCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAGTAGTAGTGTCAAAATAATGGGCAACACCTCTGGCAGGGTAGTATCTAATGGATCTCAAGTACATATTGGCCATTAA

>Glyma03g15810.2   sequence type=CDS   gene model=Glyma03g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCGATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGGACATGATACGATTAAATTAGAATCTGGCAGCTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCAGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTATGGAGATCATGGATGATAAATCTGATGGCAAAGCACAAACTGAGGGTCAATTACACCATGAAGTCAAGGACCCACCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCTTTTAATGTATACCACTCATTTGATGGTACGCAGCCTTCAACATCAATTCCAAGATCTGTTTCAATGCAAGGACCCGTTTTACAATCATCAAAACCAGATATGGAATTTTATAGAGCGCTTGAAGGAATTTTTGGTGACCAGTCAGTGCCTCACCAGTGTGGCCATGGCTGCTGTGCTGCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCTCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAGTAGTAGTGTCAAAATAATGGGCAACACCTCTGGCAGGGTAGTATCTAATGGATCTCAAGTACATATTGGCCATTAA

Predicted protein sequences of Glyma03g15810

Limit To All Plant Sequences

>Glyma03g15810.1   sequence type=predicted peptide   gene model=Glyma03g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPEETAAAAADGSGDEGLLGLDSGSGGGGRDRVKGPWSPEEDVILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVGHDTIKLESGSFMEDVSLEKAKASSEDTLSCGDVSLKSSEGRDVSSMEIMDDKSDGKAQTEGQLHHEVKDPPTLFRPVARVSAFNVYHSFDGTQPSTSIPRSVSMQGPVLQSSKPDMEFYRALEGIFGDQSVPHQCGHGCCAAPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSVKIMGNTSGRVVSNGSQVHIGH*

>Glyma03g15810.2   sequence type=predicted peptide   gene model=Glyma03g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVGHDTIKLESGSFMEDVSLEKAKASSEDTLSCGDVSLKSSEGRDVSSMEIMDDKSDGKAQTEGQLHHEVKDPPTLFRPVARVSAFNVYHSFDGTQPSTSIPRSVSMQGPVLQSSKPDMEFYRALEGIFGDQSVPHQCGHGCCAAPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSVKIMGNTSGRVVSNGSQVHIGH*

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