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Report for Sequence Feature Glyma03g14980

Feature Type:gene_model
Chromosome:Gm03
Start:19223402
stop:19224313
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37970AT Annotation by Michelle Graham. TAIR10: SOUL heme-binding family protein | chr2:15891027-15891704 FORWARD LENGTH=225 SoyBaseE_val: 1.00E-80ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
PTHR11220Panther HEME-BINDING PROTEIN-RELATED JGI ISS
PTHR11220:SF1Panther HEME-BINDING PROTEIN-RELATED JGI ISS
PF04832PFAM SOUL heme-binding protein JGI ISS
UniRef100_G7JRA5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heme-binding-like protein n=1 Tax=Medicago truncatula RepID=G7JRA5_MEDTR SoyBaseE_val: 6.00E-93ISS
UniRef100_I1JLU7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLU7_SOYBN SoyBaseE_val: 6.00E-143ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g14980 not represented in the dataset

Glyma03g14980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g26970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g074600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g14980.1   sequence type=CDS   gene model=Glyma03g14980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTAGTGTTTGGAAAGATTAGCGTTGAGACAGCAAAATATGAAGTGATCAAATCCACAAGCGAGTACGAAATTCGCAAGTATGCACCCTCAGTAGTGGCTGAAGTCACATATGACCCATCACAGTTCAAGGGGAACAAAGATGGTGGCTTTATGATTTTGGCCAATTACATTGGTGCTGTGGGGAAGCCCCAGAACACCAAGCCTGAAAAGATTGCCATGACTGCACCGGTTATAACAAAGGACAGTGTTGGTGGGGATGGTGAGACGATTGCTATGACGGCCCCCGTTGTGACGAAGGAGGGTGGCGGTGAAGGCGAAGAAGGGAATAAGAATAACAAGATGGTGACTATGCAGTTTGTTTTGCCGGCTGTGTATGGGAAAGCCGAAGAGGCGCCTAAGCCGACCGATGAGAGGGTTGTGATCAGAGAAGAGGGTGAGAGGAAGTATGGGGTGGTGAAGTTTGGAGGAGTGGCGTCGGAGCAAGTGGTGAGGGAGAAGGTGGAGAAGCTGAGGGAGAGTTTGGAGAAAGATGGGTTTAAGGTTGTTGGGGAGGTACAATCCTCCTTGGACAATTCCTGCGTTCAGGACCAACGAGGTTATGATCCCGGTTGA

>Glyma03g14980.1   sequence type=predicted peptide   gene model=Glyma03g14980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLVFGKISVETAKYEVIKSTSEYEIRKYAPSVVAEVTYDPSQFKGNKDGGFMILANYIGAVGKPQNTKPEKIAMTAPVITKDSVGGDGETIAMTAPVVTKEGGGEGEEGNKNNKMVTMQFVLPAVYGKAEEAPKPTDERVVIREEGERKYGVVKFGGVASEQVVREKVEKLRESLEKDGFKVVGEVQSSLDNSCVQDQRGYDPG*







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