Glyma03g14970 - SoyBase

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Report for Sequence Feature Glyma03g14970

Feature Type:	gene_model
Chromosome:	Gm03
Start:	19220820
stop:	19223050
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g14970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37975	AT	Annotation by Michelle Graham. TAIR10: Yos1-like protein \| chr2:15891900-15892136 REVERSE LENGTH=78	SoyBase	E_val: 3.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4779	KOG	Predicted membrane protein	JGI		ISS
PTHR15858	Panther	UNCHARACTERIZED	JGI		ISS
PF08571	PFAM	Yos1-like	JGI		ISS
UniRef100_Q10LX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10LX3_ORYSJ	SoyBase	E_val: 1.00E-26	ISS
UniRef100_UPI00023373E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023373E7 related cluster n=1 Tax=unknown RepID=UPI00023373E7	SoyBase	E_val: 6.00E-48	ISS

Expression Patterns of Glyma03g14970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g14970 not represented in the dataset	Glyma03g14970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g14970

Paralog	Evidence	Comments
Glyma01g26981	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g14970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g074700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g14970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g14970

Limit To All Plant Sequences

>Glyma03g14970.2   sequence type=transcript   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGGGTTTTCAGACTTGAGACCTCGCAGGTCGTTGTTTTTTCCTTCCCTGTGATTTTAACACTGGAGGAAAAAAATTCACTATAATGATTTTTTTTCCATGAGGATTGGTGTTCTGTTGTCTGGGATCCTTATTGTTCTCCATGATTTGGTTAAGTTGCTTAGATTTGTTCATATGAAAATTGATTGTTCTATTATTTTTTTTGTGAATTTCGGTATGGATACTATTAAAACCACTGTAATTATTGCTCCAAACAAACTTTGGAAGCTGCGAGACACCCAACCGAGCCAAGAAAAACAGCTTGCATTTTATTTAGACTTTTTCTGAGTTCTTTGTAAAATGAACATATGTTAAATTAGTTTGGGTTTGCATCCCCATTTAGCCAGTCTAGTCAGGATAGGCAAAATGTATGAAATTTATTGCAATCTGATATTTGAAGGTACATAGAAGATTGCAGAGGGCAGGAACATCTTGATAAAATCTCTTCGTTTTTCCTCCAGAATTTTACATACAATTGTCAATTCTGTGTAGAATGTCACCCTAGTTTGGGTTTGCATTCCTTGCACTCTGATTTACTTGGATAACTTTGGTTTTGGCTTTATTGATCAATATCCCATGGAGTCAAAGCATTGGCCCTGTATGCAGTTCAAACCAGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAACTTAAAAAGAGTGGTATATCATGCTCTATTCTTTGTTCTGTGTATGATATGTAAATTTTATGTTCCGTGAACAGTTGCAGTCCTATAAATTCAGTTCAGGGGTATAATGAATAGAGTACACCAGCTGTATTAGTTTAGTATTGAATGTGTCTTGATTATCATTCTTAATTCCCTTTGAATTTGCAATTCCTTATGGTCTATTAACTTATGGTACATAAATAACCATGCTAGCATAGGTCGTTTAAATACACTAACCAT

>Glyma03g14970.5   sequence type=transcript   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTTCGGAGTGTCTCTAGATATTTCTTTCTTAAGAGCGGGTTTTCAGACTTGAGACCTCGCAGGTCGTTGTTTTTTCCTTCCCTGAAGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAACTTAAAAAGAGTGGTATATCATGCTCTATTCTTTGTTCTGTGTATGATATGTAAATTTTATGTTCCGTGAACAGTTGCAGTCCTATAAATTCAGTTCAGGGGTATAATGAATAGAGTACACCAGCTGTATTAGTTTAGTATTGAATGTGTCTTGATTATCATTCTTAATTCCCTTTGAATTTGCAATTCCTTATGGTCTATTAACTTATGGTACATAAATAACCATGCTAGCATAGGTCGTTTAAATACACTAACCAT

>Glyma03g14970.6   sequence type=transcript   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTTCGGAGTGTCTCTAGATATTTCTTTCTTAAGAGCGGGTTTTCAGACTTGAGACCTCGCAGGTCGTTGTTTTTTCCTTCCCTGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAACTTAAAAAGAGTGGTATATCATGCTCTATTCTTTGTTCTGTGTATGATATGTAAATTTTATGTTCCGTGAACAGTTGCAGTCCTATAAATTCAGTTCAGGGGTATAATGAATAGAGTACACCAGCTGTATTAGTTTAGTATTGAATGTGTCTTGATTATCATTCTTAATTCCCTTTGAATTTGCAATTCCTTATGGTCTATTAACTTATGGTACATAAATAACCATGCTAGCATAGGTCGTTTAAATACACTAACCAT

>Glyma03g14970.7   sequence type=transcript   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGCAGGTCGTTGTTTTTTCCTTCCCTGTGATTTTAACACTGGAGGAAAAAAATTCACTATAATGATTTTTTTTCCATGAGGATTGGTGTTCTGTTGTCTGGGATCCTTATTGTTCTCCATGATTTGGTTAAGTTGCTTAGATTTGTTCATATGAAAATTGATTGTTCTATTATTTTTTTTGTGAATTTCGGTATGGATACTATTAAAACCACTGTAATTATTGCTCCAAACAAACTTTGGAAGCTGCGAGACACCCAACCGAGCCAAGAAAAACAGCTTGCATTTTATTTAGACTTTTTCTGAGTTCTTTGTAAAATGAACATATGTTAAATTAGTTTGGGTTTGCATCCCCATTTAGCCAGTCTAGTCAGGATAGGCAAAATGTATGAAATTTATTGCAATCTGATATTTGAAGGTACATAGAAGATTGCAGAGGGCAGGAACATCTTGATAAAATCTCTTCGTTTTTCCTCCAGAATTTTACATACAATTGTCAATTCTGTGTAGAATGTCACCCTAGTTTGGGTTTGCATTCCTTGCACTCTGATTTACTTGGATAACTTTGGTTTTGGCTTTATTGATCAATATCCCATGGAGTCAAAGCATTGGCCCTGTATGCAGTTCAAACCAGAAGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAACTTAAAAAGAGTGGTATATCATGCTCTATTCTTTGTTCTGTGTATGATATGTAAATTTTATGTTCCGTGAACAGTTGCAGTCCTATAAATTCAGTTCAGGGGTATAATGAATAGAGTACACCAGCTGTATTAGTTTAGTATTGAATGTGTCTTGATTATCATTCTTAATTCCCTTTGAATTTGCAATTCCTTATGGTCTATTAACTTATGGTACATAAATAACCATGCTAGCATAGGTCGTTTAAATACACTAACCAT

>Glyma03g14970.8   sequence type=transcript   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTTTCCTTCCCTGGTACATAGAAGATTGCAGAGGGCAGGAACATCTTGATAAAATCTCTTCGTTTTTCCTCCAGAATTTTACATACAATTGTCAATTCTGTGTAGAATGTCACCCTAGTTTGGGTTTGCATTCCTTGCACTCTGATTTACTTGGATAACTTTGGTTTTGGCTTTATTGATCAATATCCCATGGAGTCAAAGCATTGGCCCTGTATGCAGTTCAAACCAGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAACTTAAAAAGAGTGGTATATCATGCTCTATTCTTTGTTCTGTGTATGATATGTAAATTTTATGTTCCGTGAACAGTTGCAGTCCTATAAATTCAGTTCAGGGGTATAATGAATAGAGTACACCAGCTGTATTAGTTTAGTATTGAATGTGTCTTGATTATCATTCTTAATTCCCTTTGAATTTGCAATTCCTTATGGTCTATTAACTTATGGTACATAAATAACCATGCTAGCATAGGTCGTTTAAATACACTAACCAT

Coding sequences of Glyma03g14970

Limit To All Plant Sequences

>Glyma03g14970.1   sequence type=CDS   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTGGTGTTCTGTTGTCTGGGATCCTTATTGTTCTCCATGATTTGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAA

>Glyma03g14970.2   sequence type=CDS   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAA

>Glyma03g14970.5   sequence type=CDS   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTTCGGAGTGTCTCTAGATATTTCTTTCTTAAGAGCGGGTTTTCAGACTTGAGACCTCGCAGGTCGTTGTTTTTTCCTTCCCTGAAGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAA

>Glyma03g14970.6   sequence type=CDS   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTTCGGAGTGTCTCTAGATATTTCTTTCTTAAGAGCGGGTTTTCAGACTTGAGACCTCGCAGGTCGTTGTTTTTTCCTTCCCTGATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAA

>Glyma03g14970.7   sequence type=CDS   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAA

>Glyma03g14970.8   sequence type=CDS   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTGGACATTGCTAGAAGGTTTTCTGCTCTTTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGAGGATGGACATTGGCAGAAATGACAGGACCACAGAGGAATTCTCTTAAAGGGCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAACGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAA

Predicted protein sequences of Glyma03g14970

Limit To All Plant Sequences

>Glyma03g14970.1   sequence type=predicted peptide   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIGVLLSGILIVLHDLMGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

>Glyma03g14970.2   sequence type=predicted peptide   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

>Glyma03g14970.5   sequence type=predicted peptide   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLRSVSRYFFLKSGFSDLRPRRSLFFPSLKMGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

>Glyma03g14970.6   sequence type=predicted peptide   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLRSVSRYFFLKSGFSDLRPRRSLFFPSLMGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

>Glyma03g14970.7   sequence type=predicted peptide   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

>Glyma03g14970.8   sequence type=predicted peptide   gene model=Glyma03g14970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

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