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Report for Sequence Feature Glyma03g14730

Feature Type:gene_model
Chromosome:Gm03
Start:18806203
stop:18818420
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g14730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38025AT Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein | chr2:15915239-15916692 REVERSE LENGTH=234 SoyBaseE_val: 2.00E-88ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13312Panther HIV-INDUCED PROTEIN-7-LIKE PROTEASE JGI ISS
PF02338PFAM OTU-like cysteine protease JGI ISS
UniRef100_I0Z2Z5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0Z2Z5_9CHLO SoyBaseE_val: 1.00E-36ISS
UniRef100_I1JLS4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLS4_SOYBN SoyBaseE_val: 2.00E-165ISS

Expression Patterns of Glyma03g14730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g14730
ParalogEvidenceComments
Glyma01g27215 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g14730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g076600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g14730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g14730
>Glyma03g14730.1   sequence type=CDS   gene model=Glyma03g14730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGCAAGCCTTTCAAATTCAATGAGGATGTTCTCGAGCAACTTAGAAATGGGACTGCGAAATTCGAGGTTGTTTCTTCCCCGGTTCCTTCAGTTGCTGCTCCTCCTAACCGGAACACGAGCTTGTTTGGGATTGGGAATAGTAGCACTGTCTTATTCGCCAGAATTGGCTCATCCTTTGGTGGACACTCTCCAGCAATGAAGAAACTTGAGCATTTTTCAGTTCAGAAGGTTACAGGGGATGGACGGTGTCTGTTTCGTGCACTGGTCAAAGGAATGGCTTACAATAAGGGAACCACTCTCAATCAACGCGAGGAGAGAGAAAATGCAGATGAATTAAGAATGGCTGTGAAAGAAGCTATATGTGAAAATGAAGGTGAACGTAAATTATACGAAGAAGCCCTCATTGCCATCACAGTTGACGAGCCTATAAAACGTTACTGCCAGCGGATTGTGCGACCTGATTTCTGGGGAGGAGAATCAGAGCTATTGGTACTGTCAAAGTTATGTAAGCAGCCAATCATTGTGTACATACCAGAGCATGAGCATAGAAGTGGTGGTTTTGGATCTGGTTTCATTCCCATTGCAGAGTATGGAAGTGACTTTAGAAAGGGTTCTAGCAGAAAAGCTGTGAGGCTATTATACAGCGGTAAGAACCATTATGATCTTCTAGTATGA
Predicted protein sequences of Glyma03g14730
>Glyma03g14730.1   sequence type=predicted peptide   gene model=Glyma03g14730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARKPFKFNEDVLEQLRNGTAKFEVVSSPVPSVAAPPNRNTSLFGIGNSSTVLFARIGSSFGGHSPAMKKLEHFSVQKVTGDGRCLFRALVKGMAYNKGTTLNQREERENADELRMAVKEAICENEGERKLYEEALIAITVDEPIKRYCQRIVRPDFWGGESELLVLSKLCKQPIIVYIPEHEHRSGGFGSGFIPIAEYGSDFRKGSSRKAVRLLYSGKNHYDLLV*






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