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Report for Sequence Feature Glyma03g14150

Feature Type:gene_model
Chromosome:Gm03
Start:18018140
stop:18021593
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01620AT Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 1C | chr1:225986-226960 REVERSE LENGTH=214 SoyBaseE_val: 8.00E-135ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0015250GO-mf Annotation by Michelle Graham. GO Molecular Function: water channel activity SoyBaseN/AISS
KOG0223 KOG Aquaporin (major intrinsic protein family) JGI ISS
PTHR19139Panther AQUAPORIN TRANSPORTER JGI ISS
PTHR19139:SF55Panther SUBFAMILY NOT NAMED JGI ISS
PF00230PFAM Major intrinsic protein JGI ISS
UniRef100_D8FSJ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin PIP1;6 n=1 Tax=Gossypium hirsutum RepID=D8FSJ9_GOSHI SoyBaseE_val: 1.00E-135ISS
UniRef100_I1JLQ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLQ7_SOYBN SoyBaseE_val: 6.00E-150ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g14150 not represented in the dataset

Glyma03g14150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g27970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g078700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g14150.2   sequence type=CDS   gene model=Glyma03g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTGTTCAAATCTAAGAGCAAGTGTTCCACTGTGGGTATCCAAGGCATTGCTTGGGCTTTTGGGGGAATGATCTTTGCTCTTGTTTATTCCACTGCTGGAATCTCAGGGGGTCATATTAACCCAGCAGTGACGTTTGGGCTGTTCTTGGCACGCAAGCTCTCTCTGACAAGGGCAATTTTTTACATAATCATGCAGTGCTTGGGAGCTATATGTGGTGCTGGTGTAGTTAAGGGGTTCGAGCCACACCTCTATGAGAGGCTTGGTGGTGGTGCCAACACAATCGCTAAAGGGTACACCAATAGTGCTGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCATGTTCCAATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCATTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCATTATCTTCAACAAGGACCAAGCTTGGGATGACCATTGGATATTTTGGGTTGGGCCTTTCATTGGGGCAGCACTTGCAGCTTTGTACCATCAGATAGTGATCAGGGCCATCCCCTTCTCGTCGAAGTGA

>Glyma03g14150.2   sequence type=predicted peptide   gene model=Glyma03g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFKSKSKCSTVGIQGIAWAFGGMIFALVYSTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEPHLYERLGGGANTIAKGYTNSAGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIIFNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFSSK*







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