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Report for Sequence Feature Glyma03g13366

Feature Type:gene_model
Chromosome:Gm03
Start:16846564
stop:16859796
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g13366
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13200AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:7668292-7669166 REVERSE LENGTH=185 SoyBaseE_val: 2.00E-35ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q8YNQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alr4514 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YNQ0_NOSS1 SoyBaseE_val: 2.00E-08ISS
UniRef100_UPI0002336B3FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336B3F related cluster n=1 Tax=unknown RepID=UPI0002336B3F SoyBaseE_val: 3.00E-127ISS

Expression Patterns of Glyma03g13366
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g13366 not represented in the dataset
Glyma03g13366 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g13366 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g080200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g13366
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g13366
>Glyma03g13366.2   sequence type=transcript   gene model=Glyma03g13366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGGAGAAAAAAATTAAAGAACCTGAAAACTTAGATGGATTAAATTCATATTTAATAGTTTTTTCTTTGTTTTTCCCTTTCTTGAGATTTCTTTTCCAAGTTCAGTTCAGATCTTCTGGACAAGTCCAACTCGTAGTGGGGTTAACGGGACAACAGAGGCAGAGCAAGAGAGTGTTCGGAGAAAATGAACACTGTTCTTTCACCTTCTTCAGCGTTTCCTACGTTGTCCAAAACCTATGTTTCTTTTGGTCCCTTATTTTCCAGTTTCGCTGTTCCTTCTTCTTCTTCTTCGCACATTGAACTTCCCCGCAAAAGGGGTTCTCAAAACACTGGACTTCGCTGCAACTGTAGCATCTGGCCAGGTGGCCCTGGCTCTGGTGATAGTGATAGCAGCAACAGAAGTATCCTGGATGCATTTTTCTTGGGAAAAGCTGTAGCTGAAGCTCTAAATGAGCGCATTGAATCCACTGTTGGTGAGATTTTGAGCACCGTTGGAAGATTGCAAGCTGAACAGCAAAAGCAAGTCCAGGACTTTCAGGAAGAAGTGTTGGAAAGAGCCAAAAAATCAAAGGAAAACGCAGCACGTGAAGCTATGGAGGCCCAAGGATTCATTTCAAAATCTGCAGTTGAGACAAAAGTCACAGATTCAACTACTTCCAAAACTTCAAATTCTGCAACAGGTCCAGTCACTTCTGTTCAGTCCACTGACGCATCTGAAACAGATTCCGAACCTGCCAAAGAGGAGGAACCTACTAGTTCAACAAGTGATGAATGATCCATCCTAGTGTATTTGGCTTCAACTGTTGGCTGATTTTTACTGAATTTTCCTTAATACCTTATTTTCCCCAAATCTAAATATATCATGTTTAATAGATGCATCACGACTTTTTCTTAATTCCAGCCTTTCTGATATAT
Coding sequences of Glyma03g13366
>Glyma03g13366.1   sequence type=CDS   gene model=Glyma03g13366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACTGTTCTTTCACCTTCTTCAGCGTTTCCTACGTTGTCCAAAACCTATGTTTCTTTTGGTCCCTTATTTTCCAGTTTCGCTGTTCCTTCTTCTTCTTCTTCGCACATTGAACTTCCCCGCAAAAGGGGTTCTCAAAACACTGGACTTCGCTGCAACTGTAGCATCTGGCCAGGTGGCCCTGGCTCTGCAGGTGATAGTGATAGCAGCAACAGAAGTATCCTGGATGCATTTTTCTTGGGAAAAGCTGTAGCTGAAGCTCTAAATGAGCGCATTGAATCCACTGTTGGTGAGATTTTGAGCACCGTTGGAAGATTGCAAGCTGAACAGCAAAAGCAAGTCCAGGACTTTCAGGAAGAAGTGTTGGAAAGAGCCAAAAAATCAAAGGAAAACGCAGCACGTGAAGCTATGGAGGCCCAAGGATTCATTTCAAAATCTGCAGTTGAGACAAAAGTCACAGATTCAACTACTTCCAAAACTTCAAATTCTGCAACAGGTCCAGTCACTTCTGTTCAGTCCACTGACGCATCTGAAACAGATTCCGAACCTGCCAAAGAGGAGGAACCTACTAGTTCAACAAGTGATGAATGA

>Glyma03g13366.2   sequence type=CDS   gene model=Glyma03g13366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACTGTTCTTTCACCTTCTTCAGCGTTTCCTACGTTGTCCAAAACCTATGTTTCTTTTGGTCCCTTATTTTCCAGTTTCGCTGTTCCTTCTTCTTCTTCTTCGCACATTGAACTTCCCCGCAAAAGGGGTTCTCAAAACACTGGACTTCGCTGCAACTGTAGCATCTGGCCAGGTGGCCCTGGCTCTGGTGATAGTGATAGCAGCAACAGAAGTATCCTGGATGCATTTTTCTTGGGAAAAGCTGTAGCTGAAGCTCTAAATGAGCGCATTGAATCCACTGTTGGTGAGATTTTGAGCACCGTTGGAAGATTGCAAGCTGAACAGCAAAAGCAAGTCCAGGACTTTCAGGAAGAAGTGTTGGAAAGAGCCAAAAAATCAAAGGAAAACGCAGCACGTGAAGCTATGGAGGCCCAAGGATTCATTTCAAAATCTGCAGTTGAGACAAAAGTCACAGATTCAACTACTTCCAAAACTTCAAATTCTGCAACAGGTCCAGTCACTTCTGTTCAGTCCACTGACGCATCTGAAACAGATTCCGAACCTGCCAAAGAGGAGGAACCTACTAGTTCAACAAGTGATGAATGA
Predicted protein sequences of Glyma03g13366
>Glyma03g13366.1   sequence type=predicted peptide   gene model=Glyma03g13366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTVLSPSSAFPTLSKTYVSFGPLFSSFAVPSSSSSHIELPRKRGSQNTGLRCNCSIWPGGPGSAGDSDSSNRSILDAFFLGKAVAEALNERIESTVGEILSTVGRLQAEQQKQVQDFQEEVLERAKKSKENAAREAMEAQGFISKSAVETKVTDSTTSKTSNSATGPVTSVQSTDASETDSEPAKEEEPTSSTSDE*

>Glyma03g13366.2   sequence type=predicted peptide   gene model=Glyma03g13366   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTVLSPSSAFPTLSKTYVSFGPLFSSFAVPSSSSSHIELPRKRGSQNTGLRCNCSIWPGGPGSGDSDSSNRSILDAFFLGKAVAEALNERIESTVGEILSTVGRLQAEQQKQVQDFQEEVLERAKKSKENAAREAMEAQGFISKSAVETKVTDSTTSKTSNSATGPVTSVQSTDASETDSEPAKEEEPTSSTSDE*






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