Glyma03g13060 - SoyBase

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Report for Sequence Feature Glyma03g13060

Feature Type:	gene_model
Chromosome:	Gm03
Start:	16657949
stop:	16682172
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g13060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54150	AT	Annotation by Michelle Graham. TAIR10: E3 Ubiquitin ligase family protein \| chr1:20215480-20217303 FORWARD LENGTH=383	SoyBase	E_val: 9.00E-141	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG1571	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12183	Panther	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	JGI		ISS
PF12483	PFAM	E3 Ubiquitin ligase	JGI		ISS
UniRef100_I1JLP1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLP1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4VYC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Baculoviral IAP repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q4VYC9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g13060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g13060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g080300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g13060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g13060

Limit To All Plant Sequences

>Glyma03g13060.2   sequence type=transcript   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACACCCTGCGGGTTCTTCTACGGTGGTAGTTCTAGAACAAACTAAGCGACGACTGACGTGGTGGATTGTGGAAACGCAAAGAGCAATTGTTCCGAGAATGAGCAATTAATGAATGAATGATCAATGTCTCATCAGGAGCAAGCCTTTGTGTCTCTTCTCTCTCAGCTCGCCCTTTCTTTCGACGGTGCCGTTTTGGGCTTGGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCTGCCGCCCTCCGCAAGCTCCACCGCGCCCCTTCTGTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGCCGACGGAAACTCCGACGGTGGCAACATCGTAATTGTCCGCGGCACTGTCGATGCCAAGTCCACCGTCGAAGGCGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAAGTGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGAACAGACACAGGCTGATTCTTATGTTCTCTCTGTGGCAGGAAACTTTTTTGCTTGCTAACGAGAAGAATGTTTGCTTTTTATTTCGATAAGATATAGAATCTGGAGTTGTAGGGAAAACCCTCCTTTGCTCTTATTTCCTGTGAAACATTTATCAGGGGTAGATAATAGGTTGGTCGAGGTTAATTTTATAGGATTTTCTAATTATCCCAGTTGCAGTGTACATAAATATTTAATTTTGCCTAACTCCTTTAGAATGAACTCTGATATGTTATTGTGCATGTGATGCTGCTTGTTGGCTATAAATCTTTGTTTGAGCAGGATTGTGTGAATGTGATTGTAAACTCCTATACGATAATCTTGTATTATTCCTGGCTTAAAGGTAATCTCACG

>Glyma03g13060.3   sequence type=transcript   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATGGCAGCCGATCTTGATGCATGTGATCTATAGGAAGCTGTTGAAGGCATGTACGAAGTTCCATCCCTACTGGATAATCCATGAGTTGCTCAAATAAGAAATCACAAAGAGAGGAAACAAAGAGAGTCAAAGGCAAGAGCAACCTTGTTTGGAGCATTATCATCCACTATTTTGATCAGATTATTTTTTTTTAATGATTCAACGGGGCAAAACACCCTGTTGATCAGAATAATGACGCTGAAAATACCTAATGAGATTTGGGAGTTTTTGAAGCAAATGTATGATGGAAATGAAAAGGTGAAAGCAATGCAAGCGCTGGACTTGGTTCAAGAATTCGAGATGCAGAGAATGAAGGAATCAAAAACAATTAAGGAATTGACAGGCTTCTTGACACAGTCAACAATGTAAGGCTCCTTGGTACTGAATTTTCAGAAGATAGAATTGTTCAAAAAATTCTACTCATAGTGCTTGGAAAATTTGAAGCCACAATTAGGTCTCTAGAGAACTCAAGGGATTTGTCAAGCATTACTTTGACAGAATTGGTGAATGCACTACAAGCACAAGAACAAAGGAGGCTTATGATGCAAGAAGGATCTTTAGAGGGAGCTTTCCAAGCCAAGAACTGCAATGGTAACAAATACAACCAAAACAACAATTCACATGCCTTTTCACCTTGTCCCTATTGCAGGAAAAATAATCACCCACACAAGTGTTGGTGGAGGCCAGATGTGAAATGCAACAAGTGTGGTCAGTCGGGACATGTGGAGAAGATATGCAAGTCTCATTATCAACATCAGGAGGTCCAAGTTGCAGAGGAACAACTCTTTACAACAACATGCTTTACAACCAACAACCCCAAAATAGGTTGGCTTCTAGATAGTGGTTGTACAAACCACATGGCTCATGATTGAAACTCTTTAAAGATCTCAACAAAACTGTTATTTCCAAAGAATTGGAAATGGAGCACATATTGCTGTGAAAGGCATAGGAACAGTTGCAATGAAAGTCATTCAGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAGTAGATCTTTCCAGCAAAACAAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGAACAGACACAGGCTGATTCTTATGTTCTCTCTGTGGCAGGAAACTTTTTTGCTTGCTAACGAGAAGAATGTTTGCTTTTTATTTCGATAAGATATAGAATCTGGAGTTGTAGGGAAAACCCTCCTTTGCTCTTATTTCCTGTGAAACATTTATCAGGGGTAGATAATAGGTTGGTCGAGGTTAATTTTATAGGATTTTCTAATTATCCCAGTTGCAGTGTACATAAATATTTAATTTTGCCTAACTCCTTTAGAATGAACTCTGATATGTTATTGTGCATGTGATGCTGCTTGTTGGCTATAAATCTTTGTTTGAGCAGGATTGTGTGAATGTGATTGTAAACTCCTATACGATAATCTTGTATTATTCCTGGCTTAAAGGTAATCTCACG

Coding sequences of Glyma03g13060

Limit To All Plant Sequences

>Glyma03g13060.1   sequence type=CDS   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCATCAGGAGCAAGCCTTTGTGTCTCTTCTCTCTCAGCTCGCCCTTTCTTTCGACGGTGCCGTTTTGGGCTTGGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCTGCCGCCCTCCGCAAGCTCCACCGCGCCCCTTCTGTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGCCGACGGAAACTCCGACGGTGGCAACATCGTAATTGTCCGCGGCACTGTCGATGCCAAGTCCACCGTCGAAGGCGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAAGTGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAGTAGATCTTTCCAGCAAAACAAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGA

>Glyma03g13060.2   sequence type=CDS   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCATCAGGAGCAAGCCTTTGTGTCTCTTCTCTCTCAGCTCGCCCTTTCTTTCGACGGTGCCGTTTTGGGCTTGGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCTGCCGCCCTCCGCAAGCTCCACCGCGCCCCTTCTGTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGCCGACGGAAACTCCGACGGTGGCAACATCGTAATTGTCCGCGGCACTGTCGATGCCAAGTCCACCGTCGAAGGCGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAAGTGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGA

>Glyma03g13060.3   sequence type=CDS   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTCATTCAGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAGTAGATCTTTCCAGCAAAACAAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGA

Predicted protein sequences of Glyma03g13060

Limit To All Plant Sequences

>Glyma03g13060.1   sequence type=predicted peptide   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHQEQAFVSLLSQLALSFDGAVLGLALAYAAVRTLFKFTATSAALRKLHRAPSVSVSDLRSLLAEIPSDADGNSDGGNIVIVRGTVDAKSTVEGGTWKTLRPGVLVSRESGDKSVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRWPNAEYVVVNMDGSRHPLPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSSKTKILFWGGIALGSMSVGVLGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES*

>Glyma03g13060.2   sequence type=predicted peptide   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHQEQAFVSLLSQLALSFDGAVLGLALAYAAVRTLFKFTATSAALRKLHRAPSVSVSDLRSLLAEIPSDADGNSDGGNIVIVRGTVDAKSTVEGGTWKTLRPGVLVSRESGDKSVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRWPNAEYVVVNMDGSRHPLPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCSLKNGIAEIKSCKDLPYFLNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES*

>Glyma03g13060.3   sequence type=predicted peptide   gene model=Glyma03g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVIQCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRWPNAEYVVVNMDGSRHPLPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSSKTKILFWGGIALGSMSVGVLGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES*

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