Glyma03g12260 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g12260): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g12260): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma03g12260

Feature Type:	gene_model
Chromosome:	Gm03
Start:	15426862
stop:	15438399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g12260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53900	AT	Annotation by Michelle Graham. TAIR10: uracil phosphoribosyltransferase \| chr3:19956914-19959006 REVERSE LENGTH=296	SoyBase	E_val: 6.00E-132	ISS
GO:0006223	GO-bp	Annotation by Michelle Graham. GO Biological Process: uracil salvage	SoyBase	N/A	ISS
GO:0009116	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0032502	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004845	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uracil phosphoribosyltransferase activity	SoyBase	N/A	ISS
KOG1017	KOG	Predicted uracil phosphoribosyltransferase	JGI		ISS
PTHR10285	Panther	URIDINE KINASE RELATED	JGI		ISS
PTHR10285:SF6	Panther	URIDINE CYTIDINE KINASE I	JGI		ISS
PF00156	PFAM	Phosphoribosyl transferase domain	JGI		ISS
UniRef100_B9SV47	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uracil phosphoribosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SV47_RICCO	SoyBase	E_val: 4.00E-143	ISS
UniRef100_I1JLN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g12260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g12260 not represented in the dataset	Glyma03g12260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g12260

Paralog	Evidence	Comments
Glyma01g24520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g12260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g069600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g12260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g12260

Limit To All Plant Sequences

>Glyma03g12260.2   sequence type=transcript   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAACAAAAACCAATGTTATTTGAACATGAAAATGAAAATGAGATACATATGCAATGCCCTGAATTCATATCCATATATGATCTATCTCTGTCTATCCAAAACAACCGTTGATGCTAAAAATAGCATATCATATCATCTTCCCCACAAGTCACACACAAAGAACAGCTCAAACCCTCGGACCAAAATTACATCTTACATAGATACACCATTCATTATTCATACATGGCTTGTTCCCGCATTCACTTCAACCTTAATCTCCGTTTCCCCTCTGATGCGGCACCAATTGCTTCCACATGTCACTCTCCCTCTCGCCTCTCTCTTTCCCTCTCGCACTCCCCTCTCTTCACAACAACACCAAAGATCGCTTATTCCAGTGCTCCGCGGCGCACGTGTGGTGCGGTGTGCTCTCAGATGACCATGGAGGAGAAGCCTCTCTCTGAGAACCGAATGCTCGTGTATGTGCCTCCTCATCCGTTGATCAAGCATTGGGTTTCAGTTTTGAGGAATGAGCAAACTCCATGTCCCATCTTCAGAAATGCAATGGCTGAGCTGGGAAGGCTACTAATGTATGAAGCTTCAAGGGATTGGTTGCCCACCGTTTCTGGAGAGATTCAATCACCAATGGGTGTAGCCTCAGTGGAATTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCCTAAGAGCAGGCCTTGCTCTTGCTGAACATGCATCATCGATCTTGCCTGCAACAAAAACATATCATTTAGGAATAAGCAGAGATGGGGAAACTCTTCAGCCCACTATATATTTAAACAAGTTACCCGGGAAATTTCCAGAAGGATCTAAAGTTTTTGTGGTTGATCCTATGCTGGCAACAGGTGGCACTATAGTGGCAGCTGTGAGCCTCTTAAAGGAACGTGGAGTTGGCAACAAGCAGATTAAAGTGATATCTGCTGTTTCTGCCCCTCCTGCTCTTCAAAAGCTGAGCGAGCAGTTCCCTGGGCTTCATGTGTATACTGGAATAATTGACCCCGAAGTTAATGAAAAAGGGTTCATAATTCCTGGCCTTGGAGATGCTGGGGACCGTAGCTTTGGTACAGATACATGAAAATTATACGAAATACCTCATCACCTCTCCCTTGGGTGCCATATTTTACAATTTTTGAGGCCCAAAATTTGTCATTATTTTTTCGGATGGATACTGAAGTCTTGATCAGTGGCACCCTTCCGGTTTACAATTACATAGGTGTTGGTCATTATTATTATTATTATTATTATGAATTACACAGGTGTTGAAAGTTGAAACTCGTAACGTGAAAACTGGTTAGCATGTTAATTCAAATTGTTTTTTATAGCTTAAATATATTTTGGATCCCTTAAATTTGGGGTCTTCTCTTTTAGTCCTCAAATTAAAATTTACTGTTTTTAATTCTTCAAATTTACAAAATAAAAAAAAATTGTCATTTTTAACTGATTTACTGTTTGAATGCATAATTTGTGATGTTTTTTATTGGAGGGACTAAAAATAACATTTCACAAAGTTAAAAGACAAAATGTAAATATTAATTTGGGGGACTAAAAACTATATACTCAAATTTGAGGGACTTTTATCAAATAGGATTCGAAGCAAGCAAGGACATTTTACTTTCTGTACTTTCCAATTTTTTTAATATCCCTAAAGTACCATTTTCATATTA

>Glyma03g12260.3   sequence type=transcript   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCGTTGATGCTAAAAATAGCATATCATATCATCTTCCCCACAAGTCACACACAAAGAACAGCTCAAACCCTCGGACCAAAATTACATCTTACATAGATACACCATTCATTATTCATACATGGCTTGTTCCCGCATTCACTTCAACCTTAATCTCCGTTTCCCCTCTGATGCGGCACCAATTGCTTCCACATGTCACTCTCCCTCTCGCCTCTCTCTTTCCCTCTCGCACTCCCCTCTCTTCACAACAACACCAAAGATCGCTTATTCCAGTGCTCCGCGGCGCACGTGTGGTGCGGTGTGCTCTCAGATGACCATGGAGGAGAAGCCTCTCTCTGAGAACCGAATGCTCGTGTATGTGCCTCCTCATCCGTTGATCAAGCATTGGGTTTCAGTTTTGAGGAATGAGCAAACTCCATGTCCCATCTTCAGAAATGCAATGGCTGAGCTGGGAAGGCTACTAATGTATGAAGCTTCAAGGGATTGGTTGCCCACCGTTTCTGGAGAGATTCAATCACCAATGGGTGTAGCCTCAGTGGAATTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCCTAAGAGCAGGCCTTGCTCTTGCTGAACATGCATCATCGATCTTGCCTGCAACAAAAACATATCATTTAGGAATAAGCAGAGATGGGGAAACTCTTCAGCCCACTATATATTTAAACAAGTTACCCGGGAAATTTCCAGAAGGATCTAAAGTTTTTGTGGTTGATCCTATGCTGGCAACAGGTGGCACTATAGTGGCAGCTGTGAGCCTCTTAAAGGAACGTGGAGTTGGCAACAAGCAGATTAAAGTGATATCTGCTGTTTCTGCCCCTCCTGCTCTTCAAAAGCTGAGCGAGCAGTTCCCTGGGCTTCATGTGTATACTGGAATAATTGACCCCGAAGTTAATGAAAAAGGGTTGGTGTCTCATGATATTAAAATTTGAGTTAAATGCCT

Coding sequences of Glyma03g12260

Limit To All Plant Sequences

>Glyma03g12260.1   sequence type=CDS   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTTCCCGCATTCACTTCAACCTTAATCTCCGTTTCCCCTCTGATGCGGCACCAATTGCTTCCACATGTCACTCTCCCTCTCGCCTCTCTCTTTCCCTCTCGCACTCCCCTCTCTTCACAACAACACCAAAGGCAGATAATACCACTAATTCTAAAAACAGTGAATTGGATATTTTTAATTTCCCATTTATTTCATGCTTCATTTATTATTTTAATTATTTTTTTAATATTGGGTTTGTTTGCTTTTCTTTGCTTTGCTCCCATTTATTACGTTGGATTCGATTCTCACGCATGTTTATTTATATACCCTCTTTTTATTCGTTGTGTTGTGTTCTGTTGCTTTCTTTCTCCGCTCAGATCGCTTATTCCAGTGCTCCGCGGCGCACGTGTGGTGCGGTGTGCTCTCAGATGACCATGGAGGAGAAGCCTCTCTCTGAGAACCGAATGCTCGTGTATGTGCCTCCTCATCCGTTGATCAAGCATTGGGTTTCAGTTTTGAGGAATGAGCAAACTCCATGTCCCATCTTCAGAAATGCAATGGCTGAGCTGGGAAGGCTACTAATGTATGAAGCTTCAAGGGATTGGTTGCCCACCGTTTCTGGAGAGATTCAATCACCAATGGGTGTAGCCTCAGTGGAATTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCCTAAGAGCAGGCCTTGCTCTTGCTGAACATGCATCATCGATCTTGCCTGCAACAAAAACATATCATTTAGGAATAAGCAGAGATGGGGAAACTCTTCAGCCCACTATATATTTAAACAAGTTACCCGGGAAATTTCCAGAAGGATCTAAAGTTTTTGTGGTTGATCCTATGCTGGCAACAGGTGGCACTATAGTGGCAGCTGTGAGCCTCTTAAAGGAACGTGGAGTTGGCAACAAGCAGATTAAAGTGATATCTGCTGTTTCTGCCCCTCCTGCTCTTCAAAAGCTGAGCGAGCAGTTCCCTGGGCTTCATGTGTATACTGGAATAATTGACCCCGAAGTTAATGAAAAAGGGTTCATAATTCCTGGCCTTGGAGATGCTGGGGACCGTAGCTTTGGTACAGATACATGA

>Glyma03g12260.2   sequence type=CDS   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTTCCCGCATTCACTTCAACCTTAATCTCCGTTTCCCCTCTGATGCGGCACCAATTGCTTCCACATGTCACTCTCCCTCTCGCCTCTCTCTTTCCCTCTCGCACTCCCCTCTCTTCACAACAACACCAAAGATCGCTTATTCCAGTGCTCCGCGGCGCACGTGTGGTGCGGTGTGCTCTCAGATGACCATGGAGGAGAAGCCTCTCTCTGAGAACCGAATGCTCGTGTATGTGCCTCCTCATCCGTTGATCAAGCATTGGGTTTCAGTTTTGAGGAATGAGCAAACTCCATGTCCCATCTTCAGAAATGCAATGGCTGAGCTGGGAAGGCTACTAATGTATGAAGCTTCAAGGGATTGGTTGCCCACCGTTTCTGGAGAGATTCAATCACCAATGGGTGTAGCCTCAGTGGAATTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCCTAAGAGCAGGCCTTGCTCTTGCTGAACATGCATCATCGATCTTGCCTGCAACAAAAACATATCATTTAGGAATAAGCAGAGATGGGGAAACTCTTCAGCCCACTATATATTTAAACAAGTTACCCGGGAAATTTCCAGAAGGATCTAAAGTTTTTGTGGTTGATCCTATGCTGGCAACAGGTGGCACTATAGTGGCAGCTGTGAGCCTCTTAAAGGAACGTGGAGTTGGCAACAAGCAGATTAAAGTGATATCTGCTGTTTCTGCCCCTCCTGCTCTTCAAAAGCTGAGCGAGCAGTTCCCTGGGCTTCATGTGTATACTGGAATAATTGACCCCGAAGTTAATGAAAAAGGGTTCATAATTCCTGGCCTTGGAGATGCTGGGGACCGTAGCTTTGGTACAGATACATGA

>Glyma03g12260.3   sequence type=CDS   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTTCCCGCATTCACTTCAACCTTAATCTCCGTTTCCCCTCTGATGCGGCACCAATTGCTTCCACATGTCACTCTCCCTCTCGCCTCTCTCTTTCCCTCTCGCACTCCCCTCTCTTCACAACAACACCAAAGATCGCTTATTCCAGTGCTCCGCGGCGCACGTGTGGTGCGGTGTGCTCTCAGATGACCATGGAGGAGAAGCCTCTCTCTGAGAACCGAATGCTCGTGTATGTGCCTCCTCATCCGTTGATCAAGCATTGGGTTTCAGTTTTGAGGAATGAGCAAACTCCATGTCCCATCTTCAGAAATGCAATGGCTGAGCTGGGAAGGCTACTAATGTATGAAGCTTCAAGGGATTGGTTGCCCACCGTTTCTGGAGAGATTCAATCACCAATGGGTGTAGCCTCAGTGGAATTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATCCTAAGAGCAGGCCTTGCTCTTGCTGAACATGCATCATCGATCTTGCCTGCAACAAAAACATATCATTTAGGAATAAGCAGAGATGGGGAAACTCTTCAGCCCACTATATATTTAAACAAGTTACCCGGGAAATTTCCAGAAGGATCTAAAGTTTTTGTGGTTGATCCTATGCTGGCAACAGGTGGCACTATAGTGGCAGCTGTGAGCCTCTTAAAGGAACGTGGAGTTGGCAACAAGCAGATTAAAGTGATATCTGCTGTTTCTGCCCCTCCTGCTCTTCAAAAGCTGAGCGAGCAGTTCCCTGGGCTTCATGTGTATACTGGAATAATTGACCCCGAAGTTAATGAAAAAGGGTTGGTGTCTCATGATATTAAAATTTGA

Predicted protein sequences of Glyma03g12260

Limit To All Plant Sequences

>Glyma03g12260.1   sequence type=predicted peptide   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACSRIHFNLNLRFPSDAAPIASTCHSPSRLSLSLSHSPLFTTTPKADNTTNSKNSELDIFNFPFISCFIYYFNYFFNIGFVCFSLLCSHLLRWIRFSRMFIYIPSFYSLCCVLLLSFSAQIAYSSAPRRTCGAVCSQMTMEEKPLSENRMLVYVPPHPLIKHWVSVLRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLALAEHASSILPATKTYHLGISRDGETLQPTIYLNKLPGKFPEGSKVFVVDPMLATGGTIVAAVSLLKERGVGNKQIKVISAVSAPPALQKLSEQFPGLHVYTGIIDPEVNEKGFIIPGLGDAGDRSFGTDT*

>Glyma03g12260.2   sequence type=predicted peptide   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACSRIHFNLNLRFPSDAAPIASTCHSPSRLSLSLSHSPLFTTTPKIAYSSAPRRTCGAVCSQMTMEEKPLSENRMLVYVPPHPLIKHWVSVLRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLALAEHASSILPATKTYHLGISRDGETLQPTIYLNKLPGKFPEGSKVFVVDPMLATGGTIVAAVSLLKERGVGNKQIKVISAVSAPPALQKLSEQFPGLHVYTGIIDPEVNEKGFIIPGLGDAGDRSFGTDT*

>Glyma03g12260.3   sequence type=predicted peptide   gene model=Glyma03g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACSRIHFNLNLRFPSDAAPIASTCHSPSRLSLSLSHSPLFTTTPKIAYSSAPRRTCGAVCSQMTMEEKPLSENRMLVYVPPHPLIKHWVSVLRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLALAEHASSILPATKTYHLGISRDGETLQPTIYLNKLPGKFPEGSKVFVVDPMLATGGTIVAAVSLLKERGVGNKQIKVISAVSAPPALQKLSEQFPGLHVYTGIIDPEVNEKGLVSHDIKI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain