SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55610 | AT | Annotation by Michelle Graham. TAIR10: delta 1-pyrroline-5-carboxylate synthase 2 | chr3:20624278-20628989 REVERSE LENGTH=726 | SoyBase | E_val: 0 | ISS |
| GO:0006561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004349 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate 5-kinase activity | SoyBase | N/A | ISS |
| GO:0004350 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate-5-semialdehyde dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016620 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| KOG4165 | KOG | Gamma-glutamyl phosphate reductase | JGI | ISS | |
| PTHR11063 | Panther | GLUTAMATE SEMIALDEHYDE DEHYDROGENASE | JGI | ISS | |
| PTHR11063:SF2 | Panther | GLUTAMATE 5-KINASE | JGI | ISS | |
| PF00171 | PFAM | Aldehyde dehydrogenase family | JGI | ISS | |
| PF00696 | PFAM | Amino acid kinase family | JGI | ISS | |
| UniRef100_Q9AYM4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: VuP5CS protein n=1 Tax=Vigna unguiculata RepID=Q9AYM4_VIGUN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337ACB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337ACB related cluster n=1 Tax=unknown RepID=UPI0002337ACB | SoyBase | E_val: 0 | ISS |
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Glyma03g12240 not represented in the dataset |
Glyma03g12240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g24530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g069400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g12240.1 sequence type=CDS gene model=Glyma03g12240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTCTTGCAAAATGGCCACAAAAATTTGGTCAGCATCAAACCCTCCGAGTTACCCCTCTTGAATGGGGCCGCGTTAACTCTCCTCAACTCGCTCTCCGAAACTCATGAGTACTATGGCAACATAGATCCTTCCAGAGTTTTTGTCACCAAAGTGAAGCGTATCATTGTAAAGGTTGGAACAGCTGTTGTTACTCGAAGTGATGGAAGATTAGCATTGGGCAGAATTGGAGCTCTCTGTGAGCAGCTTAAAGAACTTAGCAGTCAAGGGTATGAAGTCATATTGGTAACTTCAGGTGCTGTTGGTCTTGGCAGGCAAAGGCTTAGATACCGCAAATTGGCCAATAGCAGCTTTTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTTTTCAGAGATTCTGGCTTTAGAAAACAACTTTCAGACACGGTGAACTCATTGTTAGATTTAAGGGTTATCCCCATTTTCAATGAAAATGATGCTGTTAGTACTAGGAAGGCACCATATGAGGATTCTTCGGGTATTTTCTGGGACAATGACAGTTTGGCTGGTCTATTAGCCCTTGAACTTAAAGCTGACCTCCTTGTTTTATTGAGTGATGTTGAGGGTCTTTATAGTGGTCCTCCAAGTGACCCAAACTCAAAGTTGATCCATACATATGTAAAAGAGAAGCATCAAGGGGAAATTACTTTTGGAGACAAGTCAAGATTGGGGAGAGGGGGTATGACTGCTAAAGTTAATGCTGCTGTTTGCGCTGCTCATGCTGGCATCCCGGTCATTATAACTAGTGGCTATGCTACAAACAACATCATACGAGTGCTTCAAGGGGAAAGAATAGGTACTGTATTTCATAAAGATGCTCATTTATGGACCAATATAAAGGAAATGAGCGCACGTGAAATGGCAGTTGCAGCACGTGAGGGTTCTAGACAGCTTCAGATCCTCAAATCTGAAGATAGGAGGAAAATATTGCTGGCAATTGCTGATGCATTGGAGAAAAATGAAAGTATGATAAGGCATGAGAATGAGGCTGATGTTGCTGATGCTGTGGTAGCTGGATATGAAAAATCCTTGATATCACGTTTAACCCTGAAGCAAGAGAAGATCTCTAGTCTTGCAAAGTCTGTGCGCCTGCTGGCAGATATGGAAGAACCAATTGGTCAAATTTTAAAAAGGACCGAGCTAGTAGATAAACTCATCCTGGAGAAGACATCATGTCCTTTGGGTGTCCTTCTGGTTATATTTGAGTCTCGACCTGATGCCCTTGTTCAGATAGCTGCATTGGCAATTCGAAGTGGGAATGGTTTACTGCTTAAAGGTGGAAAGGAAGCCCGACGATCAAATGCAATCTTACACAAGGTCATTACTTCAGTGATGCCAGATACTGTTGGTGACAAACTTATTGGGCTTGTGACTTCAAGAGATGAGATTCCTGACCTACTTAAGCTTGATGATGTAATAGATCTAGTGGTCCCTAGAGGCAGTAATAAGCTTGTTTCTCAAATCAAGGAATCAACAAAAATTCCTGTTCTTGGTCATGCTGATGGAATTTGTCATGTATATGTTGACAAGTCTGCTAATTTTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGACTGATTATCCTGCAGCTTGCAATGCAATGGAAACTCTTCTCATACACAAGGATCTGTCAAATAATGGTGGACTTAATGAGCTTGTCCTTGAACTCCAACGAGAAGGTGTTAAAATGTTTGGTGGACCAAGAGCCAGCGGCTTACTAAACATTGCTGAAACGAACACTTTTCATCATGAGTATAGTTCACTTGCTTGCACAGTTGAAATTGTAGAAGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAGTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTTCTTAAGTCAAGTTGACAGTGCTGCTGTATTCCACAATGCAAGTACGCGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGGTTGGAATTAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGCTGTTGACAAACAGATGGATTTTGAGAGGGAGTGGGCATGTGGTTGATGGTGATCAAGGGATCGATTACACTTACAAAGAGCTTCCACTAAAAGCATAG
>Glyma03g12240.1 sequence type=predicted peptide gene model=Glyma03g12240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELLQNGHKNLVSIKPSELPLLNGAALTLLNSLSETHEYYGNIDPSRVFVTKVKRIIVKVGTAVVTRSDGRLALGRIGALCEQLKELSSQGYEVILVTSGAVGLGRQRLRYRKLANSSFSDLQKPQGELDGKACAAVGQSSLMALYDTMFSQLDVTSSQLLVNDGFFRDSGFRKQLSDTVNSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSDPNSKLIHTYVKEKHQGEITFGDKSRLGRGGMTAKVNAAVCAAHAGIPVIITSGYATNNIIRVLQGERIGTVFHKDAHLWTNIKEMSAREMAVAAREGSRQLQILKSEDRRKILLAIADALEKNESMIRHENEADVADAVVAGYEKSLISRLTLKQEKISSLAKSVRLLADMEEPIGQILKRTELVDKLILEKTSCPLGVLLVIFESRPDALVQIAALAIRSGNGLLLKGGKEARRSNAILHKVITSVMPDTVGDKLIGLVTSRDEIPDLLKLDDVIDLVVPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANFDMAKQIVRDAKTDYPAACNAMETLLIHKDLSNNGGLNELVLELQREGVKMFGGPRASGLLNIAETNTFHHEYSSLACTVEIVEDVFAAIDHINQHGSAHTECIVTEDSEVAETFLSQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTNRWILRGSGHVVDGDQGIDYTYKELPLKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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