SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06070 | AT | Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein | chr5:1828426-1829106 REVERSE LENGTH=226 | SoyBase | E_val: 3.00E-24 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009934 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization | SoyBase | N/A | ISS |
| GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
| GO:0048446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal morphogenesis | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR26374 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26374:SF89 | Panther | TAC1 (TELOMERASE ACTIVATOR1), NUCLEIC ACID BINDING | JGI | ISS | |
| UniRef100_G7JTD7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C2H2-type zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7JTD7_MEDTR | SoyBase | E_val: 6.00E-92 | ISS |
| UniRef100_UPI000233A1D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A1D7 related cluster n=1 Tax=unknown RepID=UPI000233A1D7 | SoyBase | E_val: 0 | ISS |
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Glyma03g11960 not represented in the dataset |
Glyma03g11960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g067700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g11960.2 sequence type=transcript gene model=Glyma03g11960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCTGAGGAGATTGCAGTCAGATTTTTGAGTTAAGTCAGTACTACAGTGGCCACCACCCCACCTCTCATCTGATGTTTATGTAAGACATTAGAGGTCCCACATCGGTAACTTTCAAACTCATGGCTTCTAGTTTGCTTCTCCTCACAAAGAAAATGCAGAAAAAAGGGAACTTGTGAGTCCTATTATTCATTCTGGTGTCTCCGTCTTTGACTCTCTTAGAAAACCAAAAACACAAAACAACACACCAAAAAGGGTCAATGTTGGACAAAGAAGAAGAAGTACTCTTTGAACAGCACTAGTCTTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCGTCATGACCTTGAAACTCAGCTCCATAATAAGCCAGTTCATCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATACCCCTCTCCTGTTTGTGGATTGGCTTATAAAAAAACTAACCCTAATTCTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCACTTTCCAAGGCCTTATTGGCTCCATCAGTGAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACGAGATTTCTCCTGCGAGTAATAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCTACCCTCAAGCTGATACAAAGAAAGCCTCCAAGGAAATAATGGATTCTAGATATAGGGATAATAAGGGGAATAATGATGATATTGATGGGGATATGAGCTTGAATTCAGTTGTGTATAGAACATACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAAAGGAAAACAGATGCTTCCTCAACTCTATTTTCCTCACAGTCAAGCTCAGTTGATAGGCATCACGTGAAACCAAAGATGTTTGAGTTTAGCCCTAGCTCAATAGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAGTAATAAGTAGCATAAATAGACAAAGCTACCCTCCACTGTTAATGAATATAAAATTCTTCTCTTTTTATGTTCATCCTAGTTTGTTTTCACTTGTTTCTATTAATACCTTACAATCAAAGAAGTTTTTCATCATGTTTGGTTGGATCTCCTGAGGGCCTCAGAATGTGTATCTGCAAGGTGTCATGATAATAACAATGCTGCAATTATATTTACAGGCTTGTAAACTTCCTCGTATTAGATAGTGTGGCCAAAAAGGTGGATTGTTTTGAATAAACACAGATTACATGACTTTGTAATTGACGGTTCCATCGATTTTTACTATGATCTTATGAAAGTTTTAATGTAAAGATAATCTTATAGCTAGCTGGCTGCATACAATTTGAATGCTACAAATATT
>Glyma03g11960.1 sequence type=CDS gene model=Glyma03g11960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACAGGGTCAATGTTGGACAAAGAAGAAGAAGTACTCTTTGAACAGCACTAGTCTTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCGTCATGACCTTGAAACTCAGCTCCATAATAAGCCAGTTCATCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATACCCCTCTCCTGTTTGTGGATTGGCTTATAAAAAAACTAACCCTAATTCTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCACTTTCCAAGGCCTTATTGGCTCCATCAGTGAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACGAGATTTCTCCTGCGAGTAATAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCTACCCTCAAGCTGATACAAAGAAAGCCTCCAAGGAAATAATGGATTCTAGATATAGGGATAATAAGGGGAATAATGATGATATTGATGGGGATATGAGCTTGAATTCAGTTGTGTATAGAACATACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAAAGGAAAACAGATGCTTCCTCAACTCTATTTTCCTCACAGTCAAGCTCAGTTGATAGGCATCACGTGAAACCAAAGATGTTTGAGTTTAGCCCTAGCTCAATAGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG >Glyma03g11960.2 sequence type=CDS gene model=Glyma03g11960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCGTCATGACCTTGAAACTCAGCTCCATAATAAGCCAGTTCATCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATACCCCTCTCCTGTTTGTGGATTGGCTTATAAAAAAACTAACCCTAATTCTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCACTTTCCAAGGCCTTATTGGCTCCATCAGTGAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACGAGATTTCTCCTGCGAGTAATAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCTACCCTCAAGCTGATACAAAGAAAGCCTCCAAGGAAATAATGGATTCTAGATATAGGGATAATAAGGGGAATAATGATGATATTGATGGGGATATGAGCTTGAATTCAGTTGTGTATAGAACATACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAAAGGAAAACAGATGCTTCCTCAACTCTATTTTCCTCACAGTCAAGCTCAGTTGATAGGCATCACGTGAAACCAAAGATGTTTGAGTTTAGCCCTAGCTCAATAGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG
>Glyma03g11960.1 sequence type=predicted peptide gene model=Glyma03g11960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQGQCWTKKKKYSLNSTSLGSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCRHDLETQLHNKPVHQSSFASLGGYLYPSPVCGLAYKKTNPNSDPDFVASPSSSPSLSKALLAPSVNIGTFREETMIPLYDSSILHEISPASNNSSESWPNSAEDHRLYSCKFYPQADTKKASKEIMDSRYRDNKGNNDDIDGDMSLNSVVYRTYPSLQFESTKEPDHISCKKRKTDASSTLFSSQSSSVDRHHVKPKMFEFSPSSIEELDLELRLGNRSKV* >Glyma03g11960.2 sequence type=predicted peptide gene model=Glyma03g11960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNVHRRDRARLKQQPSSPHNEILCRHDLETQLHNKPVHQSSFASLGGYLYPSPVCGLAYKKTNPNSDPDFVASPSSSPSLSKALLAPSVNIGTFREETMIPLYDSSILHEISPASNNSSESWPNSAEDHRLYSCKFYPQADTKKASKEIMDSRYRDNKGNNDDIDGDMSLNSVVYRTYPSLQFESTKEPDHISCKKRKTDASSTLFSSQSSSVDRHHVKPKMFEFSPSSIEELDLELRLGNRSKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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