Glyma03g10046 - SoyBase

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Report for Sequence Feature Glyma03g10046

Feature Type:	gene_model
Chromosome:	Gm03
Start:	11926343
stop:	11929811
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g10046

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23730	AT	Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 16 \| chr3:8550222-8551248 FORWARD LENGTH=291	SoyBase	E_val: 3.00E-34	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006073	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
UniRef100_I1JLJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLJ6_SOYBN	SoyBase	E_val: 1.00E-126	ISS
UniRef100_P35694	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Brassinosteroid-regulated protein BRU1 n=2 Tax=Glycine max RepID=BRU1_SOYBN	SoyBase	E_val: 1.00E-36	ISS

Expression Patterns of Glyma03g10046

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g10046 not represented in the dataset	Glyma03g10046 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g10046 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g065500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g10046

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g10046

Limit To All Plant Sequences

>Glyma03g10046.1   sequence type=CDS   gene model=Glyma03g10046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCGTGCACTCACGAATGGAGAAAGGGGTGGCCTTTGCGATCTGGTGGATTCGCTCAACTATGCTGCAAGTGTGGGATGCAAGGATTGTATTATGATAATTCCAACTTCCATTGTAACTGTGATGATCCAGGATCTCACCCACGGGTTTTTGATGACCCCCTTCGTGGGTAAGTCAACAGAGAAGCAATGTCCCATTGTAATGAGTCTTAAACGATGGGAGCGGAAGGAGTGTAAACCAAACAGTCTTCCTATCTTGCACAAAATGCAGGAGATGCGGTGCAAGTCATATCTGGACGAGAAAGGGGGTAAAGTTGGGGAGATTACTAAAATCTTCAAGCATGACAATAGTGTTATAGTGAAAGATTTAAATTTGAAGACAAAGCATGTCAAGAGTAGAGAAGAGGGTGAACTGGGGCAAATTATTAAGTTGTCATCCCAAGGGCCAACACATGATGAGATTGATTTCGAGTTTTTGCGAAACCTAAGTGGGGACCCTTATATTCTCCGCACAAACGTCTTCACCCAAGGCAAAGGTAATAGGGAGCAACAGTTCTATCTCTGGTTCGACCCCACCAGAAACTTCCACACTTATTCTATCATTTGGAAGCCCCAGCACATCATGATGCAGACCTACATTTTGGAAAATAAAGAAGCATGGATCTACGGAAGATTTCTCGAGCCTTCCTGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGAAGCAGTAGCTACTTCTCAATTAGCATTGCAAGGAGAAGCTCGTGGTGGTGCTGTTGGTGTTATGGGAGCAGGCTTAAACATTGTTATGTATTTCTCACCTCCCTCTGCCATGGTAAGTTATACTAAATCTTAG

Predicted protein sequences of Glyma03g10046

Limit To All Plant Sequences

>Glyma03g10046.1   sequence type=predicted peptide   gene model=Glyma03g10046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRALTNGERGGLCDLVDSLNYAASVGCKDCIMIIPTSIVTVMIQDLTHGFLMTPFVGKSTEKQCPIVMSLKRWERKECKPNSLPILHKMQEMRCKSYLDEKGGKVGEITKIFKHDNSVIVKDLNLKTKHVKSREEGELGQIIKLSSQGPTHDEIDFEFLRNLSGDPYILRTNVFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIMMQTYILENKEAWIYGRFLEPSWLWHCGGDNLCYSISHICSKRDKEAVATSQLALQGEARGGAVGVMGAGLNIVMYFSPPSAMVSYTKS*

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