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Report for Sequence Feature Glyma03g10002

Feature Type:gene_model
Chromosome:Gm03
Start:11918753
stop:11926518
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g10002
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14305AT Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:8235335-8236605 REVERSE LENGTH=185 SoyBaseE_val: 3.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6TFE4UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TFE4_SOYBN SoyBaseE_val: 3.00E-23ISS
UniRef100_G7I4T1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal membrane protein PMP22 n=2 Tax=Medicago truncatula RepID=G7I4T1_MEDTR SoyBaseE_val: 4.00E-16ISS

Expression Patterns of Glyma03g10002
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g10002 not represented in the dataset
Glyma03g10002 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g10002 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g065400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g10002
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g10002
>Glyma03g10002.1   sequence type=CDS   gene model=Glyma03g10002   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGACGAAGTCAACAACGTTTTCAAGAAATATCTTAATCAACTTCAGCTTCATCCTCTCAGAACCAAGGCGATTACTGTGGCAGTTTTAGCTGGTTTTAGTGATGCAGTGGCACAGAAGTTATCTGGGGCCAAGAAACTTCAGTTAGAAGGGTACTTCTTTTCATGGATTAGACCTCTCCAGAGGAGCATTTCGAAACAATTATTTGGTCTAGAAAAGTCTCGCTTCTCTCTCTCTCTCGGGCGAAGAACTCTTTTGAGGATCAGAACCCCTCAATCCCTTCCTTTTCCCCTCAAATTCCACACCTCCTTCTCCTTCAAGTCTTCGACCTCAACCATCCGCGCCTTCTCTGACGCGAGGAGGACGAAGAAGACGATGAAGAAGAAGACCAAGATCCACTGA
Predicted protein sequences of Glyma03g10002
>Glyma03g10002.1   sequence type=predicted peptide   gene model=Glyma03g10002   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEVNNVFKKYLNQLQLHPLRTKAITVAVLAGFSDAVAQKLSGAKKLQLEGYFFSWIRPLQRSISKQLFGLEKSRFSLSLGRRTLLRIRTPQSLPFPLKFHTSFSFKSSTSTIRAFSDARRTKKTMKKKTKIH*






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