Glyma03g09958 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g09958

Feature Type:	gene_model
Chromosome:	Gm03
Start:	11918805
stop:	11923172
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g09958

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7I7Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmin-like protein n=1 Tax=Medicago truncatula RepID=G7I7Q4_MEDTR	SoyBase	E_val: 1.00E-09	ISS
UniRef100_I1L9X5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9X5_SOYBN	SoyBase	E_val: 2.00E-28	ISS

Expression Patterns of Glyma03g09958

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g09958 not represented in the dataset	Glyma03g09958 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09958 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g065300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g09958

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g09958

Limit To All Plant Sequences

>Glyma03g09958.2   sequence type=transcript   gene model=Glyma03g09958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCTCTCGGGCGAAGAACTCTTTTGAGGATCAGAACCCCTCAATCCCTTCCTTTTCCCCTCAAATTCCACACCTCCTTCTCCTTCAAGTCTTCGACCTCAACCATCCGCGCCTTCTCTGACGCGAGGAGGACGAAGAAGACGATGAAGAAGAAGACCAAGATCCACTGAATGTTTCAGGCGAATGCCGAGGGAGATTTCGACGAGCTTGTAGATCCACTGAAGGTGGAGGACAAGATCGGTGTTGTGCCTCATGGCCTTTCAACCAATTCAGATGTTGTCAAGAGTTTTGGTTGCGGGAAAAATTTGCAAATGGAAGAAATGAAGGTTGATTTAGACTTGTTGGTGGGTGACCCTGCTTCACTGGAGAAGAAAATTGATGCAATTCGTTTCGGTGGTCCCTAGAAGCTTCAGGGATCATGATCTGAATCTGATAGCAACACAAAGCTTCCTTTTTCTGCTTGGGCCTTCTTGAGCACTATTCTGTTTGGAAATATTGTGATATTTTATGCTGACAGTATTGCAGAGGACAGATTACACATGGTTTTCTCCTCGCCAAGGCATTTAGCAGCAGCTGGGATATATGAAGCAACTTCATTGGAGCACAATAGAAAAGATTCTATCCGAAATTCAGATTTATCCAATGGAGAATTTGATGATGAGCAATCTCAGAGCTGAAGATTATATGATTTCAAAGATATCATAATTTTCTCTTATATGCCAAGGAAATGTTACCGTTTCTGATAGCAACCTGGACTATGAGGAACATGGAGAACATAACAACAAAGTGGACCACAACAGGCCCAATAGGCCCATCAGAAAGCCTACATGCTTCAGGGATTTTATTTGAAGCCACTATCCCATTCCGCAATAAAGGAATGTTTTCATTCTGTTATGATAATTCTGTTATTAGTGATTAGCCCTACACGGCCAAAGTTAATTTTATCTTTGTATAGGAGTTA

Coding sequences of Glyma03g09958

Limit To All Plant Sequences

>Glyma03g09958.1   sequence type=CDS   gene model=Glyma03g09958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAGGCGAATGCCGAGGGAGATTTCGACGAGCTTGTAGATCCACTGAAGGTGGAGGACAAGATCGGTGTTGTGCCTCATGGCCTTTCAACCAATTCAGATGTTGTCAAGAGTTTTGGTTGCGGGAAAAATTTGCAAATGGAAGAAATGAAGGTTGATTTAGACTTGTTGGTGGGTGACCCTGCTTCACTGGAGAAGAAAATTGATGCAATTCGTTTCGGTGGTCCCTAG

>Glyma03g09958.2   sequence type=CDS   gene model=Glyma03g09958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAGGCGAATGCCGAGGGAGATTTCGACGAGCTTGTAGATCCACTGAAGGTGGAGGACAAGATCGGTGTTGTGCCTCATGGCCTTTCAACCAATTCAGATGTTGTCAAGAGTTTTGGTTGCGGGAAAAATTTGCAAATGGAAGAAATGAAGGTTGATTTAGACTTGTTGGTGGGTGACCCTGCTTCACTGGAGAAGAAAATTGATGCAATTCGTTTCGGTGGTCCCTAG

Predicted protein sequences of Glyma03g09958

Limit To All Plant Sequences

>Glyma03g09958.1   sequence type=predicted peptide   gene model=Glyma03g09958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQANAEGDFDELVDPLKVEDKIGVVPHGLSTNSDVVKSFGCGKNLQMEEMKVDLDLLVGDPASLEKKIDAIRFGGP*

>Glyma03g09958.2   sequence type=predicted peptide   gene model=Glyma03g09958   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQANAEGDFDELVDPLKVEDKIGVVPHGLSTNSDVVKSFGCGKNLQMEEMKVDLDLLVGDPASLEKKIDAIRFGGP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain