Glyma03g09765 - SoyBase

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Report for Sequence Feature Glyma03g09765

Feature Type:	gene_model
Chromosome:	Gm03
Start:	11275906
stop:	11276164
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g09765

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00710	AT	Annotation by Michelle Graham. TAIR10: photosystem II reaction center protein H \| chrC:74485-74706 FORWARD LENGTH=73	SoyBase	E_val: 3.00E-35	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0009769	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem II	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0050821	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein stabilization	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: oxygen evolving complex	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0042301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphate ion binding	SoyBase	N/A	ISS
PF00737	PFAM	Photosystem II 10 kDa phosphoprotein	JGI		ISS
UniRef100_Q2PMQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II reaction center protein H n=1 Tax=Glycine max RepID=PSBH_SOYBN	SoyBase	E_val: 4.00E-37	ISS
UniRef100_Q2PMQ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Photosystem II reaction center protein H n=1 Tax=Glycine max RepID=PSBH_SOYBN	SoyBase	E_val: 4.00E-37	ISS

Expression Patterns of Glyma03g09765

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g09765 not represented in the dataset	Glyma03g09765 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09765 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g065000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g09765

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g09765

Limit To All Plant Sequences

>Glyma03g09765.1   sequence type=CDS   gene model=Glyma03g09765   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACAAACCGCTGGGGATAATTCTATATCTGGTCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTAAATTCAGAATATGGTAAAGTAGCTCCAGAATGGGAAACTACTCCTTTGACGGGTGTTGCAATGGCTCTATTTGTGATACTTCTATCTATTATTTTGGAGATTTATAATTCGTCCATTTTACTGGACGGAATTTCTATGAATTAG

Predicted protein sequences of Glyma03g09765

Limit To All Plant Sequences

>Glyma03g09765.1   sequence type=predicted peptide   gene model=Glyma03g09765   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQTAGDNSISGPRRTVVGDLLKPLNSEYGKVAPEWETTPLTGVAMALFVILLSIILEIYNSSILLDGISMN*

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