SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g09660): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g09660): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma03g09660

Feature Type:gene_model
Chromosome:Gm03
Start:11271110
stop:11281515
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g09660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07170AT Annotation by Michelle Graham. TAIR10: Sterile alpha motif (SAM) domain-containing protein | chr3:2280428-2282097 FORWARD LENGTH=203 SoyBaseE_val: 4.00E-67ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG4374 KOG RNA-binding protein Bicaudal-C JGI ISS
PTHR10627Panther SCP160 JGI ISS
PF00536PFAM SAM domain (Sterile alpha motif) JGI ISS
UniRef100_B9S502UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9S502_RICCO SoyBaseE_val: 1.00E-67ISS
UniRef100_I1JLJ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLJ2_SOYBN SoyBaseE_val: 1.00E-148ISS

Expression Patterns of Glyma03g09660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g09660 not represented in the dataset
Glyma03g09660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g064800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g09660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g09660
>Glyma03g09660.1   sequence type=CDS   gene model=Glyma03g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGCTGATCGCGTGGAGGGTGGAGCAAGGAGGCCAGTGAAGGAACGCCTTAATGATGTGAATGGTGTCAGTGGCTCTACTCGCCCGCAGCAGCAGCGTCAAATCACTGGCAAGAGGTCAAGGCAAGATGACAAGTGGGAACATGATCTCTTTGACAATGACGAACCCCGGATCACTAATCGCAAAGTTAGTGCTCAAGATCTTCGCTTCAAGCTTCAAAGGAAGGGTCTTCAACCTGCATCTCAGAGTGGAAAGAGTTCTGCCCCAAACGTGCTGGATCTCCGTGAAAGGCTATCAGGGACAATGGCACCACAACCTACAAATTATGATCTGCCTAAGACAAAAGTTATTAAACCAAGCAGTAAAAGTGTTGGTGTTGAGGCTCCTGCAGTGCAGATCAAAAGGCCAGCTGACCCAGCTCCTAAAAAGTCATGGAAGGCTGGTCCTTCAGTTGATGAATTTTTGCGGTCCTTGGGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGCATACCAATGGGACCAAGAAAGAAGATACTTTTAGCACTGGAGTCGAAAGTCTAA
Predicted protein sequences of Glyma03g09660
>Glyma03g09660.1   sequence type=predicted peptide   gene model=Glyma03g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYADRVEGGARRPVKERLNDVNGVSGSTRPQQQRQITGKRSRQDDKWEHDLFDNDEPRITNRKVSAQDLRFKLQRKGLQPASQSGKSSAPNVLDLRERLSGTMAPQPTNYDLPKTKVIKPSSKSVGVEAPAVQIKRPADPAPKKSWKAGPSVDEFLRSLGLEKYLITFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo