Glyma03g09660 - SoyBase

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Report for Sequence Feature Glyma03g09660

Feature Type:	gene_model
Chromosome:	Gm03
Start:	11271110
stop:	11281515
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g09660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07170	AT	Annotation by Michelle Graham. TAIR10: Sterile alpha motif (SAM) domain-containing protein \| chr3:2280428-2282097 FORWARD LENGTH=203	SoyBase	E_val: 4.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG4374	KOG	RNA-binding protein Bicaudal-C	JGI		ISS
PTHR10627	Panther	SCP160	JGI		ISS
PF00536	PFAM	SAM domain (Sterile alpha motif)	JGI		ISS
UniRef100_B9S502	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9S502_RICCO	SoyBase	E_val: 1.00E-67	ISS
UniRef100_I1JLJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLJ2_SOYBN	SoyBase	E_val: 1.00E-148	ISS

Expression Patterns of Glyma03g09660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g064800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g09660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g09660

Limit To All Plant Sequences

>Glyma03g09660.1   sequence type=CDS   gene model=Glyma03g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGCTGATCGCGTGGAGGGTGGAGCAAGGAGGCCAGTGAAGGAACGCCTTAATGATGTGAATGGTGTCAGTGGCTCTACTCGCCCGCAGCAGCAGCGTCAAATCACTGGCAAGAGGTCAAGGCAAGATGACAAGTGGGAACATGATCTCTTTGACAATGACGAACCCCGGATCACTAATCGCAAAGTTAGTGCTCAAGATCTTCGCTTCAAGCTTCAAAGGAAGGGTCTTCAACCTGCATCTCAGAGTGGAAAGAGTTCTGCCCCAAACGTGCTGGATCTCCGTGAAAGGCTATCAGGGACAATGGCACCACAACCTACAAATTATGATCTGCCTAAGACAAAAGTTATTAAACCAAGCAGTAAAAGTGTTGGTGTTGAGGCTCCTGCAGTGCAGATCAAAAGGCCAGCTGACCCAGCTCCTAAAAAGTCATGGAAGGCTGGTCCTTCAGTTGATGAATTTTTGCGGTCCTTGGGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGCATACCAATGGGACCAAGAAAGAAGATACTTTTAGCACTGGAGTCGAAAGTCTAA

Predicted protein sequences of Glyma03g09660

Limit To All Plant Sequences

>Glyma03g09660.1   sequence type=predicted peptide   gene model=Glyma03g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYADRVEGGARRPVKERLNDVNGVSGSTRPQQQRQITGKRSRQDDKWEHDLFDNDEPRITNRKVSAQDLRFKLQRKGLQPASQSGKSSAPNVLDLRERLSGTMAPQPTNYDLPKTKVIKPSSKSVGVEAPAVQIKRPADPAPKKSWKAGPSVDEFLRSLGLEKYLITFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKV*

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