SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31980 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | chr4:15464905-15469204 FORWARD LEN | SoyBase | E_val: 1.00E-35 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF03140 | PFAM | Plant protein of unknown function | JGI | ISS | |
| UniRef100_G7JN13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Otubain n=1 Tax=Medicago truncatula RepID=G7JN13_MEDTR | SoyBase | E_val: 2.00E-115 | ISS |
| UniRef100_I1JLI5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLI5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g09080 not represented in the dataset |
Glyma03g09080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g063400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g09080.2 sequence type=CDS gene model=Glyma03g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACAACAACCGGACTTCAGTTGGATGGTTCCCATTGAAGTGATGCTGGGTGCCCTCTACCACGGACAAGTCCAAGCCTGCAGCATCTCAAGCGTCACGGACGAGCTTCGAAGCCCGAACGAGGCGGCTTTCAAGCCAAAGGAGGTCTCCATAGGACCCTTGCACAGAGGAACCACGAGGCACGTGCAGCTAATGGAAGAGACAAAATGGCATTACATGCGCGAATTTCTCGACAGAAGAGGCACGCAGGAGCAGAACAGAAGATCGGAGCGGAGGCTCAGAGAGTGTGGCACCGATATCCTCAAGCTGGATAAGATAATCATGGCATGCTATGGAGGTAACATCAGATCAGAACCGCAAGAGTTGGCTAAAATAATGATTGTAGATGGTTGTTTTCTATTGGAACTCCTTATCAGGCTTGGTGATTTTATATGTAACAATAGTAGTAGTTATGCAAATGACCCTATACTGAAAAATGAGGAGAAGATGGTGTCTGTTCTGAATGATATCACATTGCTTGAGAACCAAATTCCATTCATTGTTCTCAAGAAGTTGTATAGGAAGGTCTTTCCCGATGGCAGTGACATCAACAACGATAACCGGGTTGCTGATATCGTTTGCAAAGCTTTTGGTTACACTGAGGTGAAAGCCCCGGTCCACATACTTCACTTGATGCATTTGTCCACAGTTGAACAGACTCAGCAAGAGGGTAAACGCGTGGAGCAAGAACTATTGCGCTGCGCCACGAGACTTCAAGCTGCAGGAGTAGAAATTAAAGCTGCAAACACCATTGCTCGCCATAAGTTGGTGGATTGGTTCAATTTTGAGATAAGTTTCAGTGACAGCGTGTTGCGGATTCCACCGCTGTATGTTAAGGACACTACAGAAGTGAGGTGGAGGAATTTGATCGCGTGGGAGCAGAGCAGAATTTGGATCAGATGTAAATACACTTCGTATGCATTGTTCTTTCAAGGTTTGGTTTGTTGTAAGCATGACATTGAGCTGCTTGAGAAGAATGGGGTGATAGTGAACAAGGCCGGGAAGAGCACTGATGAACTGCTGGATCTGTTTCGAACGATTGCGAAGGGAGCAGAGTACATGGATTCGAGCTATAGCGAAATTGGTGCGAGGTTGAACATGTACAACAGGGGAAAAATCACAACTGCATTTCAAGGATTGCCTGTAGTCACTTGGCACAAGTGCAGACATGTTTTGCAGATCATTGTTTACTATTGGGGAAACTGGTACAGAATTTTGATACGCGATCATATTCCCACGGTGTGGAAATTCATAGGAGTGTTGGCAGCTGCTGCACTTCTTGTTCTCACAATTATGCAAACCTATTACTCATCCCGCAATAAAGACTGA
>Glyma03g09080.2 sequence type=predicted peptide gene model=Glyma03g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQQPDFSWMVPIEVMLGALYHGQVQACSISSVTDELRSPNEAAFKPKEVSIGPLHRGTTRHVQLMEETKWHYMREFLDRRGTQEQNRRSERRLRECGTDILKLDKIIMACYGGNIRSEPQELAKIMIVDGCFLLELLIRLGDFICNNSSSYANDPILKNEEKMVSVLNDITLLENQIPFIVLKKLYRKVFPDGSDINNDNRVADIVCKAFGYTEVKAPVHILHLMHLSTVEQTQQEGKRVEQELLRCATRLQAAGVEIKAANTIARHKLVDWFNFEISFSDSVLRIPPLYVKDTTEVRWRNLIAWEQSRIWIRCKYTSYALFFQGLVCCKHDIELLEKNGVIVNKAGKSTDELLDLFRTIAKGAEYMDSSYSEIGARLNMYNRGKITTAFQGLPVVTWHKCRHVLQIIVYYWGNWYRILIRDHIPTVWKFIGVLAAAALLVLTIMQTYYSSRNKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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