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Report for Sequence Feature Glyma03g09080

Feature Type:gene_model
Chromosome:Gm03
Start:10489949
stop:10492277
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g09080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31980AT Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | chr4:15464905-15469204 FORWARD LEN SoyBaseE_val: 1.00E-35ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03140PFAM Plant protein of unknown function JGI ISS
UniRef100_G7JN13UniRef Annotation by Michelle Graham. Most informative UniRef hit: Otubain n=1 Tax=Medicago truncatula RepID=G7JN13_MEDTR SoyBaseE_val: 2.00E-115ISS
UniRef100_I1JLI5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLI5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g09080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g063400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g09080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g09080
>Glyma03g09080.2   sequence type=CDS   gene model=Glyma03g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACAACAACCGGACTTCAGTTGGATGGTTCCCATTGAAGTGATGCTGGGTGCCCTCTACCACGGACAAGTCCAAGCCTGCAGCATCTCAAGCGTCACGGACGAGCTTCGAAGCCCGAACGAGGCGGCTTTCAAGCCAAAGGAGGTCTCCATAGGACCCTTGCACAGAGGAACCACGAGGCACGTGCAGCTAATGGAAGAGACAAAATGGCATTACATGCGCGAATTTCTCGACAGAAGAGGCACGCAGGAGCAGAACAGAAGATCGGAGCGGAGGCTCAGAGAGTGTGGCACCGATATCCTCAAGCTGGATAAGATAATCATGGCATGCTATGGAGGTAACATCAGATCAGAACCGCAAGAGTTGGCTAAAATAATGATTGTAGATGGTTGTTTTCTATTGGAACTCCTTATCAGGCTTGGTGATTTTATATGTAACAATAGTAGTAGTTATGCAAATGACCCTATACTGAAAAATGAGGAGAAGATGGTGTCTGTTCTGAATGATATCACATTGCTTGAGAACCAAATTCCATTCATTGTTCTCAAGAAGTTGTATAGGAAGGTCTTTCCCGATGGCAGTGACATCAACAACGATAACCGGGTTGCTGATATCGTTTGCAAAGCTTTTGGTTACACTGAGGTGAAAGCCCCGGTCCACATACTTCACTTGATGCATTTGTCCACAGTTGAACAGACTCAGCAAGAGGGTAAACGCGTGGAGCAAGAACTATTGCGCTGCGCCACGAGACTTCAAGCTGCAGGAGTAGAAATTAAAGCTGCAAACACCATTGCTCGCCATAAGTTGGTGGATTGGTTCAATTTTGAGATAAGTTTCAGTGACAGCGTGTTGCGGATTCCACCGCTGTATGTTAAGGACACTACAGAAGTGAGGTGGAGGAATTTGATCGCGTGGGAGCAGAGCAGAATTTGGATCAGATGTAAATACACTTCGTATGCATTGTTCTTTCAAGGTTTGGTTTGTTGTAAGCATGACATTGAGCTGCTTGAGAAGAATGGGGTGATAGTGAACAAGGCCGGGAAGAGCACTGATGAACTGCTGGATCTGTTTCGAACGATTGCGAAGGGAGCAGAGTACATGGATTCGAGCTATAGCGAAATTGGTGCGAGGTTGAACATGTACAACAGGGGAAAAATCACAACTGCATTTCAAGGATTGCCTGTAGTCACTTGGCACAAGTGCAGACATGTTTTGCAGATCATTGTTTACTATTGGGGAAACTGGTACAGAATTTTGATACGCGATCATATTCCCACGGTGTGGAAATTCATAGGAGTGTTGGCAGCTGCTGCACTTCTTGTTCTCACAATTATGCAAACCTATTACTCATCCCGCAATAAAGACTGA
Predicted protein sequences of Glyma03g09080
>Glyma03g09080.2   sequence type=predicted peptide   gene model=Glyma03g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQQPDFSWMVPIEVMLGALYHGQVQACSISSVTDELRSPNEAAFKPKEVSIGPLHRGTTRHVQLMEETKWHYMREFLDRRGTQEQNRRSERRLRECGTDILKLDKIIMACYGGNIRSEPQELAKIMIVDGCFLLELLIRLGDFICNNSSSYANDPILKNEEKMVSVLNDITLLENQIPFIVLKKLYRKVFPDGSDINNDNRVADIVCKAFGYTEVKAPVHILHLMHLSTVEQTQQEGKRVEQELLRCATRLQAAGVEIKAANTIARHKLVDWFNFEISFSDSVLRIPPLYVKDTTEVRWRNLIAWEQSRIWIRCKYTSYALFFQGLVCCKHDIELLEKNGVIVNKAGKSTDELLDLFRTIAKGAEYMDSSYSEIGARLNMYNRGKITTAFQGLPVVTWHKCRHVLQIIVYYWGNWYRILIRDHIPTVWKFIGVLAAAALLVLTIMQTYYSSRNKD*






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