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Report for Sequence Feature Glyma03g09003

Feature Type:gene_model
Chromosome:Gm03
Start:10277712
stop:10278485
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g09003
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16810AT Annotation by Michelle Graham. TAIR10: pumilio 24 | chr3:5723436-5727539 REVERSE LENGTH=641 SoyBaseE_val: 2.00E-24ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR13389Panther UNCHARACTERIZED JGI ISS
UniRef100_B9RTB1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein penguin, putative n=1 Tax=Ricinus communis RepID=B9RTB1_RICCO SoyBaseE_val: 6.00E-26ISS
UniRef100_UPI000233A04AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A04A related cluster n=1 Tax=unknown RepID=UPI000233A04A SoyBaseE_val: 2.00E-78ISS

Expression Patterns of Glyma03g09003
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g09003 not represented in the dataset
Glyma03g09003 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g09003 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g063100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g09003
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g09003
>Glyma03g09003.1   sequence type=CDS   gene model=Glyma03g09003   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGAAGAAGCATGACGTCGGAGACACCAAAAAGAGAAAGAGACTCAATACTAAAACTCAAAAAGATCCCAAGGCTTCAAAGCTCGTTGCCTCAAAGAAGCACAAACTAGACTCCGTTGCTAAAGACAACAAGAACAAGAAGACGACTCCTCTTACCGGCCAAGAACGTCGTCTTCATTCCAAGGAACTAGCAGATGCTAGAAAAAAGAAGAGAAAGCGACATTTCACTCTTGAGCAAGAGCTTGCGCGTCTATGGGAAAAGATGAGACGTCATGAGATTGCTAAAGAGGACAGAGCTAAGCTAGTGACTGAAGCTTTGCAAAAGATGAAGGGGAAGATTCCAGAGATTGCAAAAAGGAATGTGTGA
Predicted protein sequences of Glyma03g09003
>Glyma03g09003.1   sequence type=predicted peptide   gene model=Glyma03g09003   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKKHDVGDTKKRKRLNTKTQKDPKASKLVASKKHKLDSVAKDNKNKKTTPLTGQERRLHSKELADARKKKRKRHFTLEQELARLWEKMRRHEIAKEDRAKLVTEALQKMKGKIPEIAKRNV*






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