Glyma03g08250 - SoyBase

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Report for Sequence Feature Glyma03g08250

Feature Type:	gene_model
Chromosome:	Gm03
Start:	9107125
stop:	9110810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g08250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01520	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:206797-208399 FORWARD LENGTH=242	SoyBase	E_val: 4.00E-128	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1039	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR15067	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15067:SF7	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
UniRef100_G7JN27	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JN27_MEDTR	SoyBase	E_val: 1.00E-142	ISS
UniRef100_I1JLG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JLG4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g08250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g08250 not represented in the dataset	Glyma03g08250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g08250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g060000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g08250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g08250

Limit To All Plant Sequences

>Glyma03g08250.2   sequence type=transcript   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGCTTTCAATTTTAGTTTTATTTTACTGTTGTAGACATTACTTTTTGTTTGGACACTATGTGTAAGACTTGTGTTAGTGGCACATCAAAATGAGATAAATTTACATGGGAATTCAGGATGCATCCTTATGAAGGCTATATAGAAGCTTTATATAAATTTGAGTGCTTATGCCTGTGGGATTCTGGCATGAATTGAATCTGTTAGATGTTAATGTTCTTTTTCTCTACATTTCAGCTTTCAACATTGAAAATTTTCATTATATAATTTTAAACCTATTCTTTGTGCAAACCTTGTTTTCTGTATAGGGCTTCTGATTGTCCAAGAGAATCTGATGGCGCCTCCATACAAATGAGATTGTCTTACAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGTTTTGGGATTGCTGAGAATTCTCATATATAAGGTATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAAGAAAGCCAGTTTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAGAGATATAATAAGAAGAGGAAAATCATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTAGCTTCAATCAACAAGGAGAATCTAAAAGGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCCTATCCTCAGCGCTTTCGATTTTTCCCTAATCAATTTGGGTCTGCATGAACAGCTGTAGAATTTAATTAGGCCACTTATGTACATTGACAAATTGCCTCTCATGGTGCCAGATCCTGTGTTCATGTTTTATTCTCAGCACTTCTGATTTCCCTTTAGTGACAGATAATTTCTACTTCAAATTCCATTTGGTGTTTGATCGTCAGTTTGTGCTGGGATGATTCAAAATGTAAATACATGTTGCCTTCATAGTGAAATAATATACTTTTACTCCATAGAAATTAAAGAGTTCTCTAGTCTAAAAGTCTTGTTTGTTCATCTGAGTTAGCTCATCGTGCTAGCAGTCATAGTTTTTCTACACCCTTAAAATGTTGGTCTTAGGCACATTTTTCGGATTTTATAAGGCAATGCGCATGTACTTCAGATT

>Glyma03g08250.3   sequence type=transcript   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCATTTAAGTTTTTTTTATTATTATTATTATTATTTAATTTTTCACCAAATGTTAAACGGTTGTTGGAAGGTTCAGTGAATGGAGCCTGAAGGGTACAAAGATTTCATATCATGGGTGAAGCAAAGGAGAGCTTAGATTAATAGATTTGGTTGAAAAATGTTTGCTATGACGTAAAAAGCACTAAGCAGGCTCCTTTGGTTGGCTTTAAATGTGTCTTTATTTCAACCCGTTTTTCAAGCATATTTTGCTTTTGGCATTTTGTAGATTCAACACTGGTCGCACGCGCTTGTAGGTTGTAACTGTTGTGTCATTTTTTTTTTCTTTCATGTTGTTAATGGTAGGTGCTTTTTGTCAAAATTCAAGGATACAAGACCCAATTAAGATAATTGAAGTGTATCTTTATCTTTATCATTTTCTTTTTCCTGTTGTTATTGGTAGGTGCTTTTTATGCAAAATTCAATGGTACATTGCCTTTCACTTTTTCTGTACAAATAAACTCACTGTTACGCATGGTTTTGTTTAGGCAATGTAAGTTTCTGTTGTCATTTCTAGCTTTCAATTTTAGTTTTATTTTACTGTTGTAGACATTACTTTTTGTTTGGACACTATGTGTAAGACTTGTGTTAGTGGCACATCAAAATGAGATAAATTTACATGGGAATTCAGGATGCATCCTTATGAAGGCTATATAGAAGCTTTATATAAATTTGAGTGCTTATGCCTGTGGGATTCTGGCATGAATTGAATCTGTTAGATGGCTTCTGATTGTCCAAGAGAATCTGATGGCGCCTCCATACAAATGAGATTGTCTTACAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGTTTTGGGATTGCTGAGAATTCTCATATATAAGGTATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAAGAAAGCCAGTTTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAGAGATATAATAAGAAGAGGAAAATCATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTAGCTTCAATCAACAAGGAGAATCTAAAAGGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCCTATCCTCAGCGCTTTCGATTTTTCCCTAATCAATTTGGGTCTGCATGAACAGCTGTAGAATTTAATTAGGCCACTTATGTACATTGACAAATTGCCTCTCATGGTGCCAGATCCTGTGTTCATGTTTTATTCTCAGCACTTCTGATTTCCCTTTAGTGACAGATAATTTCTACTTCAAATTCCATTTGGTGTTTGATCGTCAGTTTGTGCTGGGATGATTCAAAATGTAAATACATGTTGCCTTCATAGTGAAATAATATACTTTTACTCCATAGAAATTAAAGAGTTCTCTAGTCTAAAAGTCTTGTTTGTTCATCTGAGTTAGCTCATCGTGCTAGCAGTCATAGTTTTTCTACACCCTTAAAATGTTGGTCTTAGGCACATTTTTCGGATTTTATAAGGCAATGCGCATGTACTTCAGATTTATCGAATTTTGTCAATATTTTTTTTGACTGAATA

Coding sequences of Glyma03g08250

Limit To All Plant Sequences

>Glyma03g08250.1   sequence type=CDS   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCAGTTCGCGAATACTCTGGCTTCTGATTGTCCAAGAGAATCTGATGGCGCCTCCATACAAATGAGATTGTCTTACAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGTTTTGGGATTGCTGAGAATTCTCATATATAAGGTATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAAGAAAGCCAGTTTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAGAGATATAATAAGAAGAGGAAAATCATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTAGCTTCAATCAACAAGGAGAATCTAAAAGGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCCTATCCTCAGCGCTTTCGATTTTTCCCTAATCAATTTGGGTCTGCATGA

>Glyma03g08250.2   sequence type=CDS   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTGTCTTACAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGTTTTGGGATTGCTGAGAATTCTCATATATAAGGTATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAAGAAAGCCAGTTTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAGAGATATAATAAGAAGAGGAAAATCATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTAGCTTCAATCAACAAGGAGAATCTAAAAGGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCCTATCCTCAGCGCTTTCGATTTTTCCCTAATCAATTTGGGTCTGCATGA

>Glyma03g08250.3   sequence type=CDS   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGATTGTCCAAGAGAATCTGATGGCGCCTCCATACAAATGAGATTGTCTTACAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGTTTTGGGATTGCTGAGAATTCTCATATATAAGGTATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAAGAAAGCCAGTTTGAAGGAATTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCAGTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACAAGCCAAGAGATATAATAAGAAGAGGAAAATCATCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACTCGTTATGTATGAAATGCTACAGAAACTGGCATGCACGATCTCAATCTTGCCCTTTCTGTCGGGACACTCTTCAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAGATGACTTAGCTTCAATCAACAAGGAGAATCTAAAAGGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCCTATCCTCAGCGCTTTCGATTTTTCCCTAATCAATTTGGGTCTGCATGA

Predicted protein sequences of Glyma03g08250

Limit To All Plant Sequences

>Glyma03g08250.1   sequence type=predicted peptide   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKSFKDSLKALEADIQFANTLASDCPRESDGASIQMRLSYSPAAQFFLFLVQWTDCHLAGVLGLLRILIYKVYEDGKTTMSIYEKKASLKEFYGVIFPSLLQLHRGISDVEERKQKDLCATKYKPRDIIRRGKSSEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSQSCPFCRDTLQRVNSGDLWIYMNSNEIDDLASINKENLKGLFMYIDKLPLIVPDPIFMSYPQRFRFFPNQFGSA*

>Glyma03g08250.2   sequence type=predicted peptide   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLSYSPAAQFFLFLVQWTDCHLAGVLGLLRILIYKVYEDGKTTMSIYEKKASLKEFYGVIFPSLLQLHRGISDVEERKQKDLCATKYKPRDIIRRGKSSEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSQSCPFCRDTLQRVNSGDLWIYMNSNEIDDLASINKENLKGLFMYIDKLPLIVPDPIFMSYPQRFRFFPNQFGSA*

>Glyma03g08250.3   sequence type=predicted peptide   gene model=Glyma03g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDCPRESDGASIQMRLSYSPAAQFFLFLVQWTDCHLAGVLGLLRILIYKVYEDGKTTMSIYEKKASLKEFYGVIFPSLLQLHRGISDVEERKQKDLCATKYKPRDIIRRGKSSEIDIEREEECGICMEMNNKVVLPNCNHSLCMKCYRNWHARSQSCPFCRDTLQRVNSGDLWIYMNSNEIDDLASINKENLKGLFMYIDKLPLIVPDPIFMSYPQRFRFFPNQFGSA*

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