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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma03g08170

Feature Type:gene_model
Chromosome:Gm03
Start:9017226
stop:9018873
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g08170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64710AT Annotation by Michelle Graham. TAIR10: GroES-like zinc-binding dehydrogenase family protein | chr1:24044638-24046313 FORWARD LENGTH=396 SoyBaseE_val: 5.00E-86ISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI ISS
PTHR11695:SF309Panther ALCOHOL DEHYDROGENASE 1 JGI ISS
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI ISS
UniRef100_G7KS95UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7KS95_MEDTR SoyBaseE_val: 6.00E-93ISS
UniRef100_UPI000233A040UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A040 related cluster n=1 Tax=unknown RepID=UPI000233A040 SoyBaseE_val: 5.00E-142ISS

Expression Patterns of Glyma03g08170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g08170 not represented in the dataset
Glyma03g08170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g08170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g059600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g08170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g08170
>Glyma03g08170.2   sequence type=CDS   gene model=Glyma03g08170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGGTCCAGTTGTTGTTACTAATGGGAACTTGAATCGAAACGATACCAGGGGAAAGACCATTACTTGCAAAGCTGCCGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAACGTGTTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTTCACCACAATCTGCCACACCGATCTCAGTTCTTGGCAAGGCAAGAACGAGGCTCAACGTGCTTATCCTCGAATTTTCGGCCATGAAGCTTGCGGGATTGCGGAGAGTGTGGGAGAAGGTGTAAATGACATGAAAGAAGGGGACTTGGTGGTGCCAATTTTCAATGGGGAATGTGGGGATTGCAAATATTGCAAGTGCGAGAAGACCAACATGTGTGAGAGATTTGGGGTGGATCCTATGAAGAAGGTGATGGCTAGTGATGGTGCCACAAGGTTTTCTACAACAGATGGAAAACCCATCTTCCATTTCTTGAACACTTCAACTTTCACAGAGTACACGGTGGTGGATTCAGCATGCGTTGTCAAGATTGACGTTGATGGCCATGGTGACCTCAATCCCTACATTAAAAAACTTACCTTAGTTGTGGCGTATCAACGGGTGTTGGGGCTGCTTGGAATATCGCTGATGAGCATTTTGGTTCAACTGTAG
Predicted protein sequences of Glyma03g08170
>Glyma03g08170.2   sequence type=predicted peptide   gene model=Glyma03g08170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIGPVVVTNGNLNRNDTRGKTITCKAAVAYGPGEPFVVERVLVHPPQKMEVRIKILFTTICHTDLSSWQGKNEAQRAYPRIFGHEACGIAESVGEGVNDMKEGDLVVPIFNGECGDCKYCKCEKTNMCERFGVDPMKKVMASDGATRFSTTDGKPIFHFLNTSTFTEYTVVDSACVVKIDVDGHGDLNPYIKKLTLVVAYQRVLGLLGISLMSILVQL*






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