SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01400 | AT | Annotation by Michelle Graham. TAIR10: HEAT repeat-containing protein | chr5:162803-171072 REVERSE LENGTH=1467 | SoyBase | E_val: 0 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0035194 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0005847 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mRNA cleavage and polyadenylation specificity factor complex | SoyBase | N/A | ISS |
| KOG1895 | KOG | mRNA cleavage and polyadenylation factor II complex, subunit PTA1 | JGI | ISS | |
| PTHR15245 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15245:SF10 | Panther | SYMPLEKIN | JGI | ISS | |
| PF11935 | PFAM | Domain of unknown function (DUF3453) | JGI | ISS | |
| PF12295 | PFAM | Symplekin tight junction protein C terminal | JGI | ISS | |
| UniRef100_B9SQ20 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Symplekin, putative n=1 Tax=Ricinus communis RepID=B9SQ20_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JLE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLE4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g07790 not represented in the dataset |
Glyma03g07790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g30320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g057600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g07790.1 sequence type=CDS gene model=Glyma03g07790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATGGCGGCGACTTCCCGCGAAAAACTGGCGAGTCTCGTGAACGCCGCCAAGCTGGCCATCGACATCCCTTCGAAGCTAGAATCGCTGCGCCAACTCCGCCACGAACTTCCCCCCGAAGACCCCGTTCTCCTCACCGAGTTCCTCCCCTCGCTCTTCCTCTTCCACTCCGATCGCTTCGGCCCCGTTCGCAAATTCCTCACCGAGATGCTTGGGGAGATTGGATTGAAGAACACAGAGTTCTTGTCCAACATTGTGCCTGTGCTTATTGATTTATTGGATGACGACACGCCGGCGGTTGTTCGCCAAGTTCTACTGTGCGGAACTGACTTGTTTCGCGCCACTCTTGAGAAAATTGTGGTTCAGGGTCTATACTCTAGTGATTTAGATGGTGCCCTTGAATCTGCTTGGGCATGGATGCTTAAATTCAAAGACAAAGTGTACTCAATAGCTTTTCAACATGGAAGTGGTGGCGCAAAGCTGCTGGCACTGAAGTTTGTTGAGGCAGTTATTCGTCTTTACACACCTGATCCCAATGGTTCCTCAGAGCCCACTTCTCATCAAGGAAGGCCTGTGGAATTTAATATATTATGGCTCAGGCGGGGTCATCCTGTACTTAACATTGGAGATTTGAAAATTGAAGCCAGCCATCGTTTGGGTCTCTTGCTTGATCAACTCAGATTTCCAACTGTGAAGTCCCTTAGTAACTCAGTAATCATTGTGCTGATTAAAAGTCTATCAGCCATTGCATTTGACAGGCCTGCATTCTATGGCCGCATCTTGCCAGTTTTGCTCAGTTTGGAACCTTCCAGCTCTGTTGTTAATGGGGTCTGTGTATCAGCTACACATTTTGCTTTGAAGAATGCCTTTGTTACTTGCTCGAAATGTACACATCCAAGTGCTGCTCCGTGGAGAGATCGTTTGGCAGAGGCCTTGAAGGAAATGCAGTCAGAAGGAAAGGCAGATCGGGTGTTCCACCTAATCTCTGCTAGTAATGGAACCATAGAGAGAGAGAAAGATGATCAACCTGTTATCAAGGAAGAGGAACCTGCAACAAATTCTGGCGATTCAGTGCAGAATAATTTGGCAAGAAAACGATCAGGATCACAAATTGGAGGTGATTTAGCTGAAGATGAAGAAACTCCTGGAAAACGGGTCAGGACAACTGTTGTTGCTTTGGAAGAGCCTAAGGAGTTAGATGAATGTACCACTACCTACTCTCAGGATGAGACTCCAACTGTACCAACATCTTCAAAAGGAGATGTGGATAATGGGCCTGTACGGCAACTTGTTGCCACATTTGGTGCTTTGATTGCTCAAGGTGAAAGAGCTGTTGGACATTTGGAAATTCTCATCTCAAGTATTTCTGCTGACTTGCTAGCTGAGGTGGTGATGGCAAATATGCAAAACCTACCTCCGAATTACCCTAATGCTGAAGGAAATGATGAACAGCTGCAAGACATTAGTATGATTGGTTCTGATGACAAGGCTAAATATCCACCATCATTTGTAGCTGCTGTTATGTCACTTTCTAGTACTTTCCCGCCAATAGCTTCCCTTCTTGATGCACATCAATCAGTGTCCAATGAGAAGTCACAAGTGGAGGAAGAAATTTCTGCAACTGCTGCAAATAGTGGTGCTGTGGATTCTGGCATGAATATTGAATCTGAAAATATACCATCGCCTATTGATTTTCCATCTTCTGATGCCAGTATACCTGGAGTAGAGAATGGCTGCACAACTATGCCTCCTGACATCCATGATGTTGGAAACTCAGAGAGTGGAATCCCTGGCCTAGATTCTTTTGGTCGTAGTGATTCTGTGTCACAAACTTCTGCTCCTTCCTTGTTGGTTTCCACTGAAACATGCCTAGAAGATGGCAGTCAAGAGCAGGTTACAAGTTTGGATCAGAGGTCACCTCTGAACGTAGCTCCATCAATATCAACAGATAGGTCTGAGGAGCTGAGCCCAAAAGCGGCTGTTAGAGATGTCAATAGCTTGGTGTCCTCAACAGCTACTTCAGTTGTGCCTCCCCGATTAGTCTTGCCAAAGATGATTGCTCCTGTTGTTGACCTTGAAGATGAACAAAAGGATCATTTGCAAAAGTCATGTTTTATGCGTATTATTGATGCATATAAGCAAATAGCTGTAGCTGGAGGCACCAACATTCGTTTTTCGATACTTGCTTATTTAGGAGTTGAGTTTCCCTTGGAATTAGACCCGTGGAAACTATTACAGAAGCATATTTTGATTGATTACATTAGTCATGAGGGACATGAGTTGACATTGCGTGTCCTCTACAGATTATTTGGTGAGGCTGAAGAGGAGCCTGACTTCTTTTCTTCCACAACAGCAGCTTCTGTATATGAAAATTTCCTCCTTACAGTGGCAGAAGCACTTAGAGATTCCTTTCCACCTTCAGATAAATCATTAAGTAAATTGCTTGGTGAATCTCCTTATTTACCAAAATCAGTTCTGAAAATTTTAGAAAACATGTGTTCTCCTGGAAATGGGGATAAAGGTGAAAAGGAGTTGCACTCACTGAATGCAGATAGAGTTACTCAAGGTCTAAGTACTGTATGGAGTTTGATTCTTCTAAGGCCTCCCATTCGAGATACTTGCTTACAAATTGCTCTACAGAGTGCAGTGCATCATCTGGAAGAAGTGCGTATGAAGGCGATACGTCTGGTGGCAAATAAGCTTTATCCTTTGTCATCCATTTCTAAGCAAATAGAAGATTTTGCAAAGGAAATGCTTTTCTCAGTGATGAGTGGGGATGCATCTGAAGCTACTGATATTGAAGGTTCCATTGCTGATTCAGAAAAGGGACCTGATGTTGAGAAGGTTCCAAACGAACAATCATCATTGAGTGGCAGCACTAAAGATGTCACCTCAGATAATCGTCAATCATGCACATCTGAGAGTGTCTCACCAGATTCAGTTTCTGAGGCTCAGAGGTGCATGTCATTGTATTTTGCTTTGTGTACAAAGAAACATTCTCTCTTTCGCCAAATATTTGTCATCTATAGAAGTACATCAAAGGCAGTGAAGCAGGCAGTACATCGCCAAATTCCAATACTAGTACGTACTATGGGCTCATCTTCAGATCTCCTTGAAATTATTTCAGATCCCCCAAATGGAAGCGAGAATCTTCTAATGCAGGTATTGCAAACACTTACAGATGGTACGATCCCTTCTAAGGATTTAATATGTACTGTGAAAAGGTTGCATGATTCAAAACTCAAGGATGCAGAGTTTCTTATTCCGATATTACCATTCCTATCAAATGATGAGGTAATGCCCATTTTTTCTCACATTGTGAATCTTCCTTTAGAGAAGTTCCAAGCAGCACTTGGGCGCATATTACAGGGATCATCACAATCAGGTCCAGTTCTTACTCCGGCTGAAGTTTTAATTGCAATTCATGGAATTGATCCTGAAAAGGACGGAATTGCCTTGAAAAAGGTCACAGACGCATGCAATGCTTGCTTTGAGCAGCGGCAAACTTTTACTCAAGAAGTTCTTGCCAGAGTTTTGAATCAGTTGGTTGAGCAGATTCCTCCTCCTTTACTGTTCATGCGTACTGTATTACAAGCAATTGGTGCTTTTCCAACACTGGTGGACTTTATAATGGGGATTCTTTCTCGCCTTGTGACGAAGCAGATATGGAAATACCCTAAGTTGTGGGTGGGATTCTTGAAGTGTGTGCAGTTGACAAAACCACAGTCATTTGGCATTTTGCTTCAGCTGCCTCCAGCACAATTGGAAAATGCATTAAATAGAATTGCAGCCTTGAAGGCACCATTGATTGCGCATGCAAGCCAGCCAGATATACAATCTAAACTTCCGAGGGCTGTGCTGGTTGTTCTGGGACTTGCTTCCGATTCTCAGGTTTCAAGTCAAGCACAAACTAGTCAGACACAAACTAGTCAGACACAGACTAGTCAAACACAGACTACTCAGACACAAACTAGTCAAACACAGACTGGTGAGACAAGCAGCTCAGACAAGGACACAGCGACAGAAAAATCAAAGGAATCGTCTACAGCCAGCTAA
>Glyma03g07790.1 sequence type=predicted peptide gene model=Glyma03g07790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMAATSREKLASLVNAAKLAIDIPSKLESLRQLRHELPPEDPVLLTEFLPSLFLFHSDRFGPVRKFLTEMLGEIGLKNTEFLSNIVPVLIDLLDDDTPAVVRQVLLCGTDLFRATLEKIVVQGLYSSDLDGALESAWAWMLKFKDKVYSIAFQHGSGGAKLLALKFVEAVIRLYTPDPNGSSEPTSHQGRPVEFNILWLRRGHPVLNIGDLKIEASHRLGLLLDQLRFPTVKSLSNSVIIVLIKSLSAIAFDRPAFYGRILPVLLSLEPSSSVVNGVCVSATHFALKNAFVTCSKCTHPSAAPWRDRLAEALKEMQSEGKADRVFHLISASNGTIEREKDDQPVIKEEEPATNSGDSVQNNLARKRSGSQIGGDLAEDEETPGKRVRTTVVALEEPKELDECTTTYSQDETPTVPTSSKGDVDNGPVRQLVATFGALIAQGERAVGHLEILISSISADLLAEVVMANMQNLPPNYPNAEGNDEQLQDISMIGSDDKAKYPPSFVAAVMSLSSTFPPIASLLDAHQSVSNEKSQVEEEISATAANSGAVDSGMNIESENIPSPIDFPSSDASIPGVENGCTTMPPDIHDVGNSESGIPGLDSFGRSDSVSQTSAPSLLVSTETCLEDGSQEQVTSLDQRSPLNVAPSISTDRSEELSPKAAVRDVNSLVSSTATSVVPPRLVLPKMIAPVVDLEDEQKDHLQKSCFMRIIDAYKQIAVAGGTNIRFSILAYLGVEFPLELDPWKLLQKHILIDYISHEGHELTLRVLYRLFGEAEEEPDFFSSTTAASVYENFLLTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSPGNGDKGEKELHSLNADRVTQGLSTVWSLILLRPPIRDTCLQIALQSAVHHLEEVRMKAIRLVANKLYPLSSISKQIEDFAKEMLFSVMSGDASEATDIEGSIADSEKGPDVEKVPNEQSSLSGSTKDVTSDNRQSCTSESVSPDSVSEAQRCMSLYFALCTKKHSLFRQIFVIYRSTSKAVKQAVHRQIPILVRTMGSSSDLLEIISDPPNGSENLLMQVLQTLTDGTIPSKDLICTVKRLHDSKLKDAEFLIPILPFLSNDEVMPIFSHIVNLPLEKFQAALGRILQGSSQSGPVLTPAEVLIAIHGIDPEKDGIALKKVTDACNACFEQRQTFTQEVLARVLNQLVEQIPPPLLFMRTVLQAIGAFPTLVDFIMGILSRLVTKQIWKYPKLWVGFLKCVQLTKPQSFGILLQLPPAQLENALNRIAALKAPLIAHASQPDIQSKLPRAVLVVLGLASDSQVSSQAQTSQTQTSQTQTSQTQTTQTQTSQTQTGETSSSDKDTATEKSKESSTAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
