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Report for Sequence Feature Glyma03g07540

Feature Type:gene_model
Chromosome:Gm03
Start:8115841
stop:8120518
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g07540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51840AT Annotation by Michelle Graham. TAIR10: acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436 SoyBaseE_val: 0ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0044265GO-bp Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process SoyBaseN/AISS
GO:0046459GO-bp Annotation by Michelle Graham. GO Biological Process: short-chain fatty acid metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0003995GO-mf Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity SoyBaseN/AISS
GO:0003997GO-mf Annotation by Michelle Graham. GO Molecular Function: acyl-CoA oxidase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016627GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
KOG0138 KOG Glutaryl-CoA dehydrogenase JGI ISS
PTHR10909Panther ELECTRON TRANSPORT OXIDOREDUCTASE JGI ISS
PTHR10909:SF129Panther SUBFAMILY NOT NAMED JGI ISS
PF00441PFAM Acyl-CoA dehydrogenase, C-terminal domain JGI ISS
PF02770PFAM Acyl-CoA dehydrogenase, middle domain JGI ISS
PF02771PFAM Acyl-CoA dehydrogenase, N-terminal domain JGI ISS
UniRef100_B0M198UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal acyl-CoA oxidase n=1 Tax=Glycine max RepID=B0M198_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JLD2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JLD2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g07540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g07540 not represented in the dataset
Glyma03g07540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g07540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g056400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g07540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g07540
>Glyma03g07540.2   sequence type=transcript   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACTTGTAGTTATCACCTTATTTTGCGTGCCTTTCCGTCGTGCTTTTTATTAAAATACCCTCCTTCCTTCCTACCATACCATACTGCCCAGTTTCTTCTCCATCTACCACTTGGCTTTCACGTTTACCTTCGCAGCGCTCTTTCTCTCTGAACCCTAATTTACACACACTCCCTTTATTCGATCCCTCTCTCCAACCATGGCGATCAACTCTTCCAAGAATCCAGATGGTTCTGTCCAAAATGCAATGCCTTCGTATTTTTATTCTCCACCACTAGATGTTTCTGCTGCATTTCCACAAGCAACACCAGCATCAACGTTTCCTCCTTGTGCTTCAGATTATTTTCAATTGGACAACTTATTGACAACAGAGGAGCAAGCCATTAGGAAGAAAGTAAGAGAGTGTATGGAAAAAGAAATTGCTCCAATAATGACTGAGGCATGTATTTGTGATGCTGTTACTACTTGGATGGAAACAATTACGATGTGAAATTATTCTCCCATAATGTTATCTTTTTTCTTTCTTTCAATCCCATCATCATGCAATTTTTTTTTTCTTCTCAGTACTGGGAGAAGGCCAAGTTTCCATTTCATGTTATTCCAAAGCTTGGTGCGTTGCGCATTGCTGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTATCACTGGAAGTGCTATAGCTGTGGCAGAAGTTGCAAGAGTTGATGCAAGTTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTATGTGGATCAGAAGCTCAGAAGCAAAAGTATTTGCCTTCTTTGGCACAATTGCAAACTGTAGCATGTTGGGCTTTGACCGAACCTGACTATGGAAGTGATGCTAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGAGGTTGGATCCTGGAGGGTCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTTTTGGTTGTCTTTGCTAGGAATGCATCAACTAATCAGATAAATGGATTTATTATTAAAAAGGATGCTCCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTCAGGATTGTACAAAATGGAGACATTGTTATGAGGAAAGTTTTTGTCCCTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTACTTGCTGTTTCACGCGTAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTACGATATGTGTCACAGGTACCTAAAGGAGAGGAAACAATTTGGAGCACCATTAGCAGCTTTCCAAATCAGCCAGCAGAAACTTGTTCAGATGCTTGGTAATATTCAAGCTATGATACTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCAAGCTAGCTTGGGAAAGTCATGGATCACTTTGAGAGCACGAGAAACAGCTGCCTTGGGGCGAGAGTTGCTAGGTGGCAATGGAATTTTGGCCGATTTCCTTGTGGCGAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAATACCTTGGTTACAGGTAGAGAAGTTACTGGTTTTGCCAGCTTTAAGCCAGTTGCTCAAAGAAGTCGATTGTAAAAGTGAAACACATTACATGCTCCTTTTGTAGACTCCATTAGGCAACTTCAATGTATGGCATGTGACTGTGACTGTGTATTGGTTAATGTTTTGTATTTTGAGAATTGAGAAGCATTTAATTTAATAATTATACAAATGCTCGTGTTGATGGCAACAGAATGAGAAAAAAATTAGAGTTCTTGAATCCAGATATTTTTTCACATTTACATCTATTCTTTGTTGTGG

>Glyma03g07540.3   sequence type=transcript   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACTTGTAGTTATCACCTTATTTTGCGTGCCTTTCCGTCGTGCTTTTTATTAAAATACCCTCCTTCCTTCCTACCATACCATACTGCCCAGTTTCTTCTCCATCTACCACTTGGCTTTCACGTTTACCTTCGCAGCGCTCTTTCTCTCTGAACCCTAATTTACACACACTCCCTTTATTCGATCCCTCTCTCCAACCATGGCGATCAACTCTTCCAAGAATCCAGATGGTTCTGTCCAAAATGCAATGCCTTCGTATTTTTATTCTCCACCACTAGATGTTTCTGCTGCATTTCCACAAGCAACACCAGCATCAACGTTTCCTCCTTGTGGTAAGAAATTTCTTTGATTATTTAGGACATGCTACAAGTAACATGTGCATTACTTGGCAAGCAGATATATATATTTGTTTAATATTTTGAGTTAAACAAGATATGCTTCAGGAATTCACTTTCATTTTTATGTCTTGATGTTTGAAAAGTACAGCTTCAGATTATTTTCAATTGGACAACTTATTGACAACAGAGGAGCAAGCCATTAGGAAGAAAGTAAGAGAGTGTATGGAAAAAGAAATTGCTCCAATAATGACTGAGTACTGGGAGAAGGCCAAGTTTCCATTTCATGTTATTCCAAAGCTTGGTGCGTTGCGCATTGCTGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTATCACTGGAAGTGCTATAGCTGTGGCAGAAGTTGCAAGAGTTGATGCAAGTTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTATGTGGATCAGAAGCTCAGAAGCAAAAGTATTTGCCTTCTTTGGCACAATTGCAAACTGTAGCATGTTGGGCTTTGACCGAACCTGACTATGGAAGTGATGCTAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGAGGTTGGATCCTGGAGGGTCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTTTTGGTTGTCTTTGCTAGGAATGCATCAACTAATCAGATAAATGGATTTATTATTAAAAAGGATGCTCCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTCAGGATTGTACAAAATGGAGACATTGTTATGAGGAAAGTTTTTGTCCCTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTACTTGCTGTTTCACGCGTAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTACGATATGTGTCACAGGTACCTAAAGGAGAGGAAACAATTTGGAGCACCATTAGCAGCTTTCCAAATCAGCCAGCAGAAACTTGTTCAGATGCTTGGTAATATTCAAGCTATGATACTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCAAGCTAGCTTGGGAAAGTCATGGATCACTTTGAGAGCACGAGAAACAGCTGCCTTGGGGCGAGAGTTGCTAGGTGGCAATGGAATTTTGGCCGATTTCCTTGTGGCGAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAATACCTTGGTTACAGGTAGAGAAGTTACTGGTTTTGCCAGCTTTAAGCCAGTTGCTCAAAGAAGTCGATTGTAAAAGTGAAACACATTACATGCTCCTTTTGTAGACTCCATTAGGCAACTTCAATGTATGGCATGTGACTGTGACTGTGTATTGGTTAATGTTTTGTATTTTGAGAATTGAGAAGCATTTAATTTAATAATTATACAAATGCTCGTGTTGATGGCAACAGAATGAGAAAAAAATTAGAGTTCTTGAATCCAGATATTTTTTCACATTTACATCTATTCTTTGTTGTGG
Coding sequences of Glyma03g07540
>Glyma03g07540.1   sequence type=CDS   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATCAACTCTTCCAAGAATCCAGATGGTTCTGTCCAAAATGCAATGCCTTCGTATTTTTATTCTCCACCACTAGATGTTTCTGCTGCATTTCCACAAGCAACACCAGCATCAACGTTTCCTCCTTGTGCTTCAGATTATTTTCAATTGGACAACTTATTGACAACAGAGGAGCAAGCCATTAGGAAGAAAGTAAGAGAGTGTATGGAAAAAGAAATTGCTCCAATAATGACTGAGTACTGGGAGAAGGCCAAGTTTCCATTTCATGTTATTCCAAAGCTTGGTGCGTTGCGCATTGCTGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTATCACTGGAAGTGCTATAGCTGTGGCAGAAGTTGCAAGAGTTGATGCAAGTTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTATGTGGATCAGAAGCTCAGAAGCAAAAGTATTTGCCTTCTTTGGCACAATTGCAAACTGTAGCATGTTGGGCTTTGACCGAACCTGACTATGGAAGTGATGCTAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGAGGTTGGATCCTGGAGGGTCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTTTTGGTTGTCTTTGCTAGGAATGCATCAACTAATCAGATAAATGGATTTATTATTAAAAAGGATGCTCCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTCAGGATTGTACAAAATGGAGACATTGTTATGAGGAAAGTTTTTGTCCCTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTACTTGCTGTTTCACGCGTAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTACGATATGTGTCACAGGTACCTAAAGGAGAGGAAACAATTTGGAGCACCATTAGCAGCTTTCCAAATCAGCCAGCAGAAACTTGTTCAGATGCTTGGTAATATTCAAGCTATGATACTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCAAGCTAGCTTGGGAAAGTCATGGATCACTTTGAGAGCACGAGAAACAGCTGCCTTGGGGCGAGAGTTGCTAGGTGGCAATGGAATTTTGGCCGATTTCCTTGTGGCGAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAATACCTTGGTTACAGGTAGAGAAGTTACTGGTTTTGCCAGCTTTAAGCCAGTTGCTCAAAGAAGTCGATTGTAA

>Glyma03g07540.2   sequence type=CDS   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTTTTTTTTTCTTCTCAGTACTGGGAGAAGGCCAAGTTTCCATTTCATGTTATTCCAAAGCTTGGTGCGTTGCGCATTGCTGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTATCACTGGAAGTGCTATAGCTGTGGCAGAAGTTGCAAGAGTTGATGCAAGTTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTATGTGGATCAGAAGCTCAGAAGCAAAAGTATTTGCCTTCTTTGGCACAATTGCAAACTGTAGCATGTTGGGCTTTGACCGAACCTGACTATGGAAGTGATGCTAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGAGGTTGGATCCTGGAGGGTCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTTTTGGTTGTCTTTGCTAGGAATGCATCAACTAATCAGATAAATGGATTTATTATTAAAAAGGATGCTCCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTCAGGATTGTACAAAATGGAGACATTGTTATGAGGAAAGTTTTTGTCCCTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTACTTGCTGTTTCACGCGTAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTACGATATGTGTCACAGGTACCTAAAGGAGAGGAAACAATTTGGAGCACCATTAGCAGCTTTCCAAATCAGCCAGCAGAAACTTGTTCAGATGCTTGGTAATATTCAAGCTATGATACTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCAAGCTAGCTTGGGAAAGTCATGGATCACTTTGAGAGCACGAGAAACAGCTGCCTTGGGGCGAGAGTTGCTAGGTGGCAATGGAATTTTGGCCGATTTCCTTGTGGCGAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAATACCTTGGTTACAGGTAGAGAAGTTACTGGTTTTGCCAGCTTTAAGCCAGTTGCTCAAAGAAGTCGATTGTAA

>Glyma03g07540.3   sequence type=CDS   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAAGAAATTGCTCCAATAATGACTGAGTACTGGGAGAAGGCCAAGTTTCCATTTCATGTTATTCCAAAGCTTGGTGCGTTGCGCATTGCTGGTGGCACAATCAAGGATTATGGTTGTCCTGGTCTTTCTATCACTGGAAGTGCTATAGCTGTGGCAGAAGTTGCAAGAGTTGATGCAAGTTGTTCAACTTTTATTTTGGTCCATTCATCCTTGGCAATGCTCACTATTGCATTATGTGGATCAGAAGCTCAGAAGCAAAAGTATTTGCCTTCTTTGGCACAATTGCAAACTGTAGCATGTTGGGCTTTGACCGAACCTGACTATGGAAGTGATGCTAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGAGGTTGGATCCTGGAGGGTCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTTTTGGTTGTCTTTGCTAGGAATGCATCAACTAATCAGATAAATGGATTTATTATTAAAAAGGATGCTCCTGGTTTAACAGTCACAAAAATAGAGAATAAAATTGGACTCAGGATTGTACAAAATGGAGACATTGTTATGAGGAAAGTTTTTGTCCCTGACGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTACTTGCTGTTTCACGCGTAATGGTTGCTTGGCAACCCATTGGTATATCGATGGGCATCTACGATATGTGTCACAGGTACCTAAAGGAGAGGAAACAATTTGGAGCACCATTAGCAGCTTTCCAAATCAGCCAGCAGAAACTTGTTCAGATGCTTGGTAATATTCAAGCTATGATACTTGTTGGTTGGCGCCTCTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCAAGCTAGCTTGGGAAAGTCATGGATCACTTTGAGAGCACGAGAAACAGCTGCCTTGGGGCGAGAGTTGCTAGGTGGCAATGGAATTTTGGCCGATTTCCTTGTGGCGAAGGCATTCTGTGATTTAGAACCCATCTATACCTACGAAGGCACGTATGACATTAATACCTTGGTTACAGGTAGAGAAGTTACTGGTTTTGCCAGCTTTAAGCCAGTTGCTCAAAGAAGTCGATTGTAA
Predicted protein sequences of Glyma03g07540
>Glyma03g07540.1   sequence type=predicted peptide   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAINSSKNPDGSVQNAMPSYFYSPPLDVSAAFPQATPASTFPPCASDYFQLDNLLTTEEQAIRKKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALRIAGGTIKDYGCPGLSITGSAIAVAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLQTVACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNASTNQINGFIIKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQISQQKLVQMLGNIQAMILVGWRLCKLYESGKMTPGQASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGFASFKPVAQRSRL*

>Glyma03g07540.2   sequence type=predicted peptide   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQFFFSSQYWEKAKFPFHVIPKLGALRIAGGTIKDYGCPGLSITGSAIAVAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLQTVACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNASTNQINGFIIKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQISQQKLVQMLGNIQAMILVGWRLCKLYESGKMTPGQASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGFASFKPVAQRSRL*

>Glyma03g07540.3   sequence type=predicted peptide   gene model=Glyma03g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEIAPIMTEYWEKAKFPFHVIPKLGALRIAGGTIKDYGCPGLSITGSAIAVAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLQTVACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNASTNQINGFIIKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQISQQKLVQMLGNIQAMILVGWRLCKLYESGKMTPGQASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGFASFKPVAQRSRL*






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