Glyma03g07420 - SoyBase

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Report for Sequence Feature Glyma03g07420

Feature Type:	gene_model
Chromosome:	Gm03
Start:	7957470
stop:	7962959
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g07420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51800	AT	Annotation by Michelle Graham. TAIR10: metallopeptidase M24 family protein \| chr3:19211261-19213568 REVERSE LENGTH=385	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006164	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009987	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004177	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity	SoyBase	N/A	ISS
GO:0008235	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity	SoyBase	N/A	ISS
KOG2776	KOG	Metallopeptidase	JGI		ISS
PTHR10804	Panther	PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P)	JGI		ISS
PTHR10804:SF11	Panther	XAA-PRO AMINOPEPTIDASE	JGI		ISS
PF00557	PFAM	Metallopeptidase family M24	JGI		ISS
UniRef100_A0EVX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EBP1 n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX1_9FABA	SoyBase	E_val: 0	ISS
UniRef100_I1JLC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLC4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g07420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g07420 not represented in the dataset	Glyma03g07420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g07420

Paralog	Evidence	Comments
Glyma01g29420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g07420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g055500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g07420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g07420

Limit To All Plant Sequences

>Glyma03g07420.4   sequence type=transcript   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAATTTACTCAGATTAACGACAATTAAATTACATACGAGTGAGAGAAGAATGATCTCTTACCTTAAAAAAAACTCCAAAAGAGAGAGAAACGTTATTATTAGGAACTAAAGCAAAAACCCTAACGCTAGTGCAACCAAAGCACAAATCCTATATAAGCCACCGCTTAACCTTGACCCTGTATGCGACTAACCCTAGTTCATTGCACTGCAACTTAGCCACTTGAACCCCCTTCGTAAGCCTCTTCACATCTTCACTTCTTCTTCCGCACTAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAGCAAACTGGTAGCATGTACAAGAATGTGAAGAGGAAGATAGAGAGAGGTGTTGCCTTCCCTACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGATGGTGATATAGTGAAAATTGACATGGCTTGCCATATAGATGGGTTCATTGCTGCTGTGGCACACACTCATGTTCTTCAGGAGGGGCCAGTTACAGGACGGGCAGCCGATGCTCTTGCAGCAGCAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTGATGGGAATAAGGTTGTGGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCCTTCTCTGCAAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGATCAGATCGTGTTACGTCTCACTCACTCCAGGAGTTGCAGCCCACCAAAACAATAGATGATCCCGAAATCAAGGCGTGGCTAGCATTGGGCACAAAGACAAAGAAGAAAGGCGGTGGAAAGAAGAAGAAAGGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGAGAGACAAAAACCCTTTGATTTTGCTTTTGATCCCTTTCAATTTTGGTACATTTTTCACCAAGTTGTATCTGCTTGATTGTGAATTTAGTACAGCTTTCGGACATCCAATGTTAATAGGAATTTGATTTCCTTGGCTATTGTACTTGACCTGAATGCTGTACTCCTGATTAAGCATAAATATGCTTAATTGTTGGAGGGGTTTTAATTTATAAACAAAAGATATCAAATTTAAAACCCAATTACATGGTTGGAAATGTATGTTCTGTGAGGTTTTGAAATGGTTAACCTTGTTGGTTTGGGAACACAATTGTTTGGTATGCACGTAGCTGCTAGATTGTTGTGGGAAGAATGAGTTTTTACGTGAGATGAGCAAAAATCTTTAATAAAATTATCATCTTGAAGATGAACTATTTTGGGAA

>Glyma03g07420.5   sequence type=transcript   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATGCGACTAACCCTAGTTCATTGCACTGCAACTTAGCCACTTGAACCCCCTTCAATACGAAACCAGAGGGAATTCACAAAAGAGGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAGCAAACTGGTAGCATGTACAAGAATGTGAAGAGGAAGATAGAGAGAGGTGTTGCCTTCCCTACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGATGGTGATATAGTGAAAATTGACATGGCTTGCCATATAGATGGGTTCATTGCTGCTGTGGCACACACTCATGTTCTTCAGGAGGGGCCAGTTACAGGACGGGCAGCCGATGCTCTTGCAGCAGCAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTGATGGGAATAAGGTTGTGGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCCTTCTCTGCAAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGATCAGATCGTGTTACGTCTCACTCACTCCAGGAGTTGCAGCCCACCAAAACAATAGATGATCCCGAAATCAAGGCGTGGCTAGCATTGGGCACAAAGACAAAGAAGAAAGGCGGTGGAAAGAAGAAGAAAGGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGAGAGACAAAAACCCTTTGATTTTGCTTTTGATCCCTTTCAATTTTGGTACATTTTTCACCAAGTTGTATCTGCTTGATTGTGAATTTAGTACAGCTTTCGGACATCCAATGTTAATAGGAATTTGATTTCCTTGGCTATTGTACTTGACCTGAATGCTGTACTCCTGATTAAGCATAAATATGCTTAATTGTTGGAGGGGTTTTAATTTATAAACAAAAGATATCAAATTTAAAACCCAATTACATGGTTGGAAATGTATGTTCTGTGAGGTTTTGAAATGGTT

Coding sequences of Glyma03g07420

Limit To All Plant Sequences

>Glyma03g07420.3   sequence type=CDS   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAGCAAACTGGTAGCATGTACAAGAATGTGAAGAGGAAGATAGAGAGAGGTGTTGCCTTCCCTACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGATGGTGATATAGTGAAAATTGACATGGCTTGCCATATAGATGGGTTCATTGCTGCTGTGGCACACACTCATGTTCTTCAGGAGGGGCCAGTTACAGGACGGGCAGCCGATGCTCTTGCAGCAGCAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTGATGGGAATAAGGTTGTGGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCCTTCTCTGCAAGGTTAGCTTGA

>Glyma03g07420.4   sequence type=CDS   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAGCAAACTGGTAGCATGTACAAGAATGTGAAGAGGAAGATAGAGAGAGGTGTTGCCTTCCCTACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGATGGTGATATAGTGAAAATTGACATGGCTTGCCATATAGATGGGTTCATTGCTGCTGTGGCACACACTCATGTTCTTCAGGAGGGGCCAGTTACAGGACGGGCAGCCGATGCTCTTGCAGCAGCAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTGATGGGAATAAGGTTGTGGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCCTTCTCTGCAAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGATCAGATCGTGTTACGTCTCACTCACTCCAGGAGTTGCAGCCCACCAAAACAATAGATGATCCCGAAATCAAGGCGTGGCTAGCATTGGGCACAAAGACAAAGAAGAAAGGCGGTGGAAAGAAGAAGAAAGGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGA

>Glyma03g07420.5   sequence type=CDS   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAGCAAACTGGTAGCATGTACAAGAATGTGAAGAGGAAGATAGAGAGAGGTGTTGCCTTCCCTACATGTGTGTCTGTGAACAACACTGTCTGTCACTTCTCTCCTCTTGCCAGTGATGAAACAGTGTTGGAAGATGGTGATATAGTGAAAATTGACATGGCTTGCCATATAGATGGGTTCATTGCTGCTGTGGCACACACTCATGTTCTTCAGGAGGGGCCAGTTACAGGACGGGCAGCCGATGCTCTTGCAGCAGCAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTGATGGGAATAAGGTTGTGGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCCTTCTCTGCAAGGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGGTGATTATGTTGCACATATCAAATTCACTGTCTTGCTAATGCCCAATGGATCAGATCGTGTTACGTCTCACTCACTCCAGGAGTTGCAGCCCACCAAAACAATAGATGATCCCGAAATCAAGGCGTGGCTAGCATTGGGCACAAAGACAAAGAAGAAAGGCGGTGGAAAGAAGAAGAAAGGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACCCCAAGAACAAGATTGA

Predicted protein sequences of Glyma03g07420

Limit To All Plant Sequences

>Glyma03g07420.3   sequence type=predicted peptide   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLTSPEVVTKYKSAAEIVNRALQLVISECKPKAKIVDLCEKGDSYIREQTGSMYKNVKRKIERGVAFPTCVSVNNTVCHFSPLASDETVLEDGDIVKIDMACHIDGFIAAVAHTHVLQEGPVTGRAADALAAANTAAEVALRLVRPGRKNKDVTEAIQKIAAAYDCKIVEGVLSHQMKQFVIDGNKVVVSVSNPDTRVDDAEFEENEVYAIDIVASTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARLA*

>Glyma03g07420.4   sequence type=predicted peptide   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLTSPEVVTKYKSAAEIVNRALQLVISECKPKAKIVDLCEKGDSYIREQTGSMYKNVKRKIERGVAFPTCVSVNNTVCHFSPLASDETVLEDGDIVKIDMACHIDGFIAAVAHTHVLQEGPVTGRAADALAAANTAAEVALRLVRPGRKNKDVTEAIQKIAAAYDCKIVEGVLSHQMKQFVIDGNKVVVSVSNPDTRVDDAEFEENEVYAIDIVASTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRVTSHSLQELQPTKTIDDPEIKAWLALGTKTKKKGGGKKKKGKKGAEAEPMDATNDATPQEQD*

>Glyma03g07420.5   sequence type=predicted peptide   gene model=Glyma03g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDEREEKELDLTSPEVVTKYKSAAEIVNRALQLVISECKPKAKIVDLCEKGDSYIREQTGSMYKNVKRKIERGVAFPTCVSVNNTVCHFSPLASDETVLEDGDIVKIDMACHIDGFIAAVAHTHVLQEGPVTGRAADALAAANTAAEVALRLVRPGRKNKDVTEAIQKIAAAYDCKIVEGVLSHQMKQFVIDGNKVVVSVSNPDTRVDDAEFEENEVYAIDIVASTGDGKPKLLDEKQTTIYKRAVDKSYHLKMKASRFIFSEISQKFPIMPFSARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRVTSHSLQELQPTKTIDDPEIKAWLALGTKTKKKGGGKKKKGKKGAEAEPMDATNDATPQEQD*

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