SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01580 | AT | Annotation by Michelle Graham. TAIR10: gamma interferon responsive lysosomal thiol (GILT) reductase family protein | chr5:222760-223852 REVERSE LENGTH=233 | SoyBase | E_val: 3.00E-84 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG3160 | KOG | Gamma-interferon inducible lysosomal thiol reductase | JGI | ISS | |
| PTHR13234 | Panther | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE (GILT)-RELATED | JGI | ISS | |
| PTHR13234:SF6 | Panther | LYSOSOMAL THIOL REDUCTASE-RELATED | JGI | ISS | |
| PF03227 | PFAM | Gamma interferon inducible lysosomal thiol reductase (GILT) | JGI | ISS | |
| UniRef100_G7JLT4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gamma-interferon-inducible lysosomal thiol reductase n=1 Tax=Medicago truncatula RepID=G7JLT4_MEDTR | SoyBase | E_val: 2.00E-130 | ISS |
| UniRef100_I1JL84 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JL84_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g06460 not represented in the dataset |
Glyma03g06460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g31230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g050500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g06460.2 sequence type=transcript gene model=Glyma03g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAGTAGTAAAATTAGAATGTAAAATGAGAATTGTTTCACAATTTTCACTTCAAAAGATCAAAAGTGACATTGGCACTTTGCAGGAGCAAGTTGAGACAATGAGAGGGAAGAAGATACCTTCCTTCAACAGCCTATGAATCACACAACTAGTAATCAAACTCTTTGATTCTTCTCTACCATTTCCAAAGCACAAAGATGAAAATGCCTCCTTTTCTTCATTCTTTTCCTCCTCGTTCATTCTTCTTCTGTTGCTTCCTTCTCCTTCCACTCTTGCTCTTGCTCTTGCTCTTGGTGGCACCTTCTTCTTCAGGTGCTCCAAATGAAAAGATTGGTCCCTTGGGGCAATGCTTGGATTGCACCTGATGGAACTGTTGTTTGTCAGCATGGAGATGATGAATGCTTTCTAAACACGATCGAGGCCTGCGCTATTACAATCTATCCAGACGTGGTACAACATTTCAGATATGTACGGTGCTTGGAGAATCTCACCTTAGAGGGGAGACACAACCAATGGGTTAACTGCTTCCAAATGACTGGGTTGGGAACATCACCTATTGATTGTTACACAAGTGGAAATGGAAAAGCTATTGACCAAAAATATGCAAAGGAAACTGCTCAGCTTAATCCTCCTCATAGATTTGTTCCATGGGTGGTTGTAAACAACCAAGCACTCCAAGAGGACTACCAAAATTTTGTAACCTATATTTGTAGGGCTTACAAAGGCAATGTGATACCAAATGCTTGTAGATCACTCTCAACAAAAACTTATGACTCAAATGAAAAAGTCAATTCCTTTCAACCTGTTTGCTATGTTGATGAAGCTAGAAATCTTAGCTTTCCACTAGTCACTAGATTAAGTAATAAATCCCCGTGAAAATGAAGTTGGAATATACTTCATGTGGTTGTATAAAAACTTCCACTTTGGAAAAACAAGCTAAACCTCTTGACTAGTCTATAACTTCAGATGCTCATGACTTGGTTTAGACTTTGGACGTGTAATTTATTCTTCCATTTTAATTCTCTCTCTTAATACACACATATGGGACAAAAGAAAATTATAGTTA
>Glyma03g06460.1 sequence type=CDS gene model=Glyma03g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGCCTCCTTTTCTTCATTCTTTTCCTCCTCGTTCATTCTTCTTCTGTTGCTTCCTTCTCCTTCCACTCTTGCTCTTGCTCTTGCTCTTGGTGGCACCTTCTTCTTCAGGTGCTCCAAATGAAAAGGTAACCGTGTCACTCTATTATGAAAGTTTATGTCCCTATTGTGCTGATTTCATAGTGAACCATCTTGTGAGGCTCTTCCAAACGGGTCTCATCTCCATTGTTAACCTCAGATTGGTCCCTTGGGGCAATGCTTGGATTGCACCTGATGGAACTGTTGTTTGTCAGCATGGAGATGATGAATGCTTTCTAAACACGATCGAGGCCTGCGCTATTACAATCTATCCAGACGTGGTACAACATTTCAGATATGTACGGTGCTTGGAGAATCTCACCTTAGAGGGGAGACACAACCAATGGGTTAACTGCTTCCAAATGACTGGGTTGGGAACATCACCTATTGATTGTTACACAAGTGGAAATGGAAAAGCTATTGACCAAAAATATGCAAAGGAAACTGCTCAGCTTAATCCTCCTCATAGATTTGTTCCATGGGTGGTTGTAAACAACCAAGCACTCCAAGAGGACTACCAAAATTTTGTAACCTATATTTGTAGGGCTTACAAAGGCAATGTGATACCAAATGCTTGTAGATCACTCTCAACAAAAACTTATGACTCAAATGAAAAAGTCAATTCCTTTCAACCTGTTTGCTATGTTGATGAAGCTAGAAATCTTAGCTTTCCACTAGTCACTAGATTAAGTAATAAATCCCCGTGA >Glyma03g06460.2 sequence type=CDS gene model=Glyma03g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAGATTGGTCCCTTGGGGCAATGCTTGGATTGCACCTGATGGAACTGTTGTTTGTCAGCATGGAGATGATGAATGCTTTCTAAACACGATCGAGGCCTGCGCTATTACAATCTATCCAGACGTGGTACAACATTTCAGATATGTACGGTGCTTGGAGAATCTCACCTTAGAGGGGAGACACAACCAATGGGTTAACTGCTTCCAAATGACTGGGTTGGGAACATCACCTATTGATTGTTACACAAGTGGAAATGGAAAAGCTATTGACCAAAAATATGCAAAGGAAACTGCTCAGCTTAATCCTCCTCATAGATTTGTTCCATGGGTGGTTGTAAACAACCAAGCACTCCAAGAGGACTACCAAAATTTTGTAACCTATATTTGTAGGGCTTACAAAGGCAATGTGATACCAAATGCTTGTAGATCACTCTCAACAAAAACTTATGACTCAAATGAAAAAGTCAATTCCTTTCAACCTGTTTGCTATGTTGATGAAGCTAGAAATCTTAGCTTTCCACTAGTCACTAGATTAAGTAATAAATCCCCGTGA
>Glyma03g06460.1 sequence type=predicted peptide gene model=Glyma03g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMPPFLHSFPPRSFFFCCFLLLPLLLLLLLLVAPSSSGAPNEKVTVSLYYESLCPYCADFIVNHLVRLFQTGLISIVNLRLVPWGNAWIAPDGTVVCQHGDDECFLNTIEACAITIYPDVVQHFRYVRCLENLTLEGRHNQWVNCFQMTGLGTSPIDCYTSGNGKAIDQKYAKETAQLNPPHRFVPWVVVNNQALQEDYQNFVTYICRAYKGNVIPNACRSLSTKTYDSNEKVNSFQPVCYVDEARNLSFPLVTRLSNKSP* >Glyma03g06460.2 sequence type=predicted peptide gene model=Glyma03g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRLVPWGNAWIAPDGTVVCQHGDDECFLNTIEACAITIYPDVVQHFRYVRCLENLTLEGRHNQWVNCFQMTGLGTSPIDCYTSGNGKAIDQKYAKETAQLNPPHRFVPWVVVNNQALQEDYQNFVTYICRAYKGNVIPNACRSLSTKTYDSNEKVNSFQPVCYVDEARNLSFPLVTRLSNKSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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