SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38320 | AT | Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| PTHR13533 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13533:SF3 | Panther | gb def: unknown protein [takifugu rubripes] | JGI | ISS | |
| PF03005 | PFAM | Arabidopsis proteins of unknown function | JGI | ISS | |
| UniRef100_O80919 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=O80919_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339EDA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339EDA related cluster n=1 Tax=unknown RepID=UPI0002339EDA | SoyBase | E_val: 0 | ISS |
|
Glyma03g06360 not represented in the dataset |
Glyma03g06360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g049800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g06360.2 sequence type=transcript gene model=Glyma03g06360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGGCACATCAAATAGTGCTAGGGAGCAATTGGGGAATCAGAAACATTTTTCAGTCTCTTGTGGCCATCTTAACCACTATTCTAGTTGTCGCTGCCATTTATCTAACACAGGAGGGAGAACAATGGTCTAATGAAAGGAACAAGTTACATTCATTATCAAAATGTAACTTGTTTTCTGGCAAGTGGGTTTTTGATAATGAATCATATCCACTCTACAAGGAGCATCAGTGCACGTTCATGTCTGATCAATTGGCTTGTGAGAAGTTTGGAAGGAAGGATCTAAGCTACCAGAATTGGAGGTGGAAGCCCCACCAATGTGACTTACCCAGGTTCAATGCCACAGCATTGCTTGAAAGGCTAAGGAACAAGAGGATGGTGTTTGTGGGGGATTCTCTCAACAGAGGCCAGTGGGTTTCAATGGTTTGCCTTGTTGAATCTTCTGTTCCCCCAACTCTCAAATCCATGCGGACTATTGCAAATGGGTCACTCAACATTTTTAAGGCCGAAGAATACAATGCAACAATCGAGTTCTATTGGGCCCCATTGCTGGTAGAATCAAACTCGGATGACCCTGTGAACCATAGGGTAGCCGAAAGGACTGTGAGAGTGCAGGCCATAGAGAAGCATGCTAGGTACTGGACTGATGCAGACATTCTGGTCTTCAACACTTTCCTCTGGTGGAGAAGGCGCGCAATGAATGTGCTGTGGGGTTCATTTGGAGACCCAAATGGGATAAGCAAAAGGGTAGGTATGGTGCGAGTCTATGAGATGGCCTTGAGGACCTGGTCAGATTGGTTGGAAGTCCATATTAAACCTAACAAGACCAAGTTGTTCTTCGTTTCTATGTCACCAACTCACCAAAAGTATGGTCATGAATGGGGAGGCACTAAGGGTGACAATTGTTACAAAGAAACAGATCAAATTACAGAAGAAGGGTATTGGGGGAATGGTTCAATTCCAAGTATGATGCGAGTTGTGGAAAATGTGATTGAAAATTTGAATGGAAGAGGTTTGAATGTTCAATTGCTTAACATCACACAGCTCTCAGAGTATAGGAAAGAAGGGCACCCATCAATCTATAGAAAGCAATGGGACCCTCTAACTGAAGAACAATTATCAAATCCAAAAACTTATGCTGATTGCATACATTGGTGCCTCCCTGGTGTGCCTGATGCGTGGAATGAGCTACTCTATGCCTATATTTTTCATCGATGA
>Glyma03g06360.1 sequence type=CDS gene model=Glyma03g06360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGGCACATCAAATAGTGCTAGGGAGCAATTGGGGAATCAGAAACATTTTTCAGTCTCTTGTGGCCATCTTAACCACTATTCTAGTTGTCGCTGCCATTTATCTAACACAGGAGGGAGAACAATGGTCTAATGAAAGGAACAAGTTACATTCATTATCAAAATGTAACTTGTTTTCTGGCAAGTGGGTTTTTGATAATGAATCATATCCACTCTACAAGGAGCATCAGTGCACGTTCATGTCTGATCAATTGGCTTGTGAGAAGTTTGGAAGGAAGGATCTAAGCTACCAGAATTGGAGGTGGAAGCCCCACCAATGTGACTTACCCAGGTTCAATGCCACAGCATTGCTTGAAAGGCTAAGGAACAAGAGGATGGTGTTTGTGGGGGATTCTCTCAACAGAGGCCAGTGGGTTTCAATGGTTTGCCTTGTTGAATCTTCTGTTCCCCCAACTCTCAAATCCATGCGGACTATTGCAAATGGGTCACTCAACATTTTTAAGGCCGAAGAATACAATGCAACAATCGAGTTCTATTGGGCCCCATTGCTGGTAGAATCAAACTCGGATGACCCTGTGAACCATAGGGTAGCCGAAAGGACTGTGAGAGTGCAGGCCATAGAGAAGCATGCTAGGTACTGGACTGATGCAGACATTCTGGTCTTCAACACTTTCCTCTGGTGGAGAAGGCGCGCAATGAATGTGCTGTGGGGTTCATTTGGAGACCCAAATGGGATAAGCAAAAGGGTAGGTATGGTGCGAGTCTATGAGATGGCCTTGAGGACCTGGTCAGATTGGTTGGAAGTCCATATTAAACCTAACAAGACCAAGTTGTTCTTCGTTTCTATGTCACCAACTCACCAAAAGGTCATGAATGGGGAGGCACTAAGGGTGACAATTGTTACAAAGAAACAGATCAAATTACAGAAGAAGGGTATTGGGGGAATGGTTCAATTCCAAGTATGA >Glyma03g06360.2 sequence type=CDS gene model=Glyma03g06360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGGCACATCAAATAGTGCTAGGGAGCAATTGGGGAATCAGAAACATTTTTCAGTCTCTTGTGGCCATCTTAACCACTATTCTAGTTGTCGCTGCCATTTATCTAACACAGGAGGGAGAACAATGGTCTAATGAAAGGAACAAGTTACATTCATTATCAAAATGTAACTTGTTTTCTGGCAAGTGGGTTTTTGATAATGAATCATATCCACTCTACAAGGAGCATCAGTGCACGTTCATGTCTGATCAATTGGCTTGTGAGAAGTTTGGAAGGAAGGATCTAAGCTACCAGAATTGGAGGTGGAAGCCCCACCAATGTGACTTACCCAGGTTCAATGCCACAGCATTGCTTGAAAGGCTAAGGAACAAGAGGATGGTGTTTGTGGGGGATTCTCTCAACAGAGGCCAGTGGGTTTCAATGGTTTGCCTTGTTGAATCTTCTGTTCCCCCAACTCTCAAATCCATGCGGACTATTGCAAATGGGTCACTCAACATTTTTAAGGCCGAAGAATACAATGCAACAATCGAGTTCTATTGGGCCCCATTGCTGGTAGAATCAAACTCGGATGACCCTGTGAACCATAGGGTAGCCGAAAGGACTGTGAGAGTGCAGGCCATAGAGAAGCATGCTAGGTACTGGACTGATGCAGACATTCTGGTCTTCAACACTTTCCTCTGGTGGAGAAGGCGCGCAATGAATGTGCTGTGGGGTTCATTTGGAGACCCAAATGGGATAAGCAAAAGGGTAGGTATGGTGCGAGTCTATGAGATGGCCTTGAGGACCTGGTCAGATTGGTTGGAAGTCCATATTAAACCTAACAAGACCAAGTTGTTCTTCGTTTCTATGTCACCAACTCACCAAAAGTATGGTCATGAATGGGGAGGCACTAAGGGTGACAATTGTTACAAAGAAACAGATCAAATTACAGAAGAAGGGTATTGGGGGAATGGTTCAATTCCAAGTATGATGCGAGTTGTGGAAAATGTGATTGAAAATTTGAATGGAAGAGGTTTGAATGTTCAATTGCTTAACATCACACAGCTCTCAGAGTATAGGAAAGAAGGGCACCCATCAATCTATAGAAAGCAATGGGACCCTCTAACTGAAGAACAATTATCAAATCCAAAAACTTATGCTGATTGCATACATTGGTGCCTCCCTGGTGTGCCTGATGCGTGGAATGAGCTACTCTATGCCTATATTTTTCATCGATGA
>Glyma03g06360.1 sequence type=predicted peptide gene model=Glyma03g06360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKAHQIVLGSNWGIRNIFQSLVAILTTILVVAAIYLTQEGEQWSNERNKLHSLSKCNLFSGKWVFDNESYPLYKEHQCTFMSDQLACEKFGRKDLSYQNWRWKPHQCDLPRFNATALLERLRNKRMVFVGDSLNRGQWVSMVCLVESSVPPTLKSMRTIANGSLNIFKAEEYNATIEFYWAPLLVESNSDDPVNHRVAERTVRVQAIEKHARYWTDADILVFNTFLWWRRRAMNVLWGSFGDPNGISKRVGMVRVYEMALRTWSDWLEVHIKPNKTKLFFVSMSPTHQKVMNGEALRVTIVTKKQIKLQKKGIGGMVQFQV* >Glyma03g06360.2 sequence type=predicted peptide gene model=Glyma03g06360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKAHQIVLGSNWGIRNIFQSLVAILTTILVVAAIYLTQEGEQWSNERNKLHSLSKCNLFSGKWVFDNESYPLYKEHQCTFMSDQLACEKFGRKDLSYQNWRWKPHQCDLPRFNATALLERLRNKRMVFVGDSLNRGQWVSMVCLVESSVPPTLKSMRTIANGSLNIFKAEEYNATIEFYWAPLLVESNSDDPVNHRVAERTVRVQAIEKHARYWTDADILVFNTFLWWRRRAMNVLWGSFGDPNGISKRVGMVRVYEMALRTWSDWLEVHIKPNKTKLFFVSMSPTHQKYGHEWGGTKGDNCYKETDQITEEGYWGNGSIPSMMRVVENVIENLNGRGLNVQLLNITQLSEYRKEGHPSIYRKQWDPLTEEQLSNPKTYADCIHWCLPGVPDAWNELLYAYIFHR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
