Glyma03g06012 - SoyBase

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Report for Sequence Feature Glyma03g06012

Feature Type:	gene_model
Chromosome:	Gm03
Start:	6188437
stop:	6196273
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g06012

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44510	AT	Annotation by Michelle Graham. TAIR10: target of AVRB operation1 \| chr5:17929673-17934188 REVERSE LENGTH=1187	SoyBase	E_val: 6.00E-38	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF300	Panther		JGI		ISS
PF01582	PFAM	TIR domain	JGI		ISS
UniRef100_G7JKN3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Resistance protein n=1 Tax=Medicago truncatula RepID=G7JKN3_MEDTR	SoyBase	E_val: 7.00E-68	ISS
UniRef100_UPI0002339D7F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D7F related cluster n=1 Tax=unknown RepID=UPI0002339D7F	SoyBase	E_val: 2.00E-104	ISS

Expression Patterns of Glyma03g06012

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g06012 not represented in the dataset	Glyma03g06012 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g06012 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g048800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g06012

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g06012

Limit To All Plant Sequences

>Glyma03g06012.2   sequence type=transcript   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGGTTATGGCTTTACACATGTAAGCTTTAGTTAAAAATCTGATCCCTCGTATGCCAAAACATCAGTTGGGTAAAATCATTCGAGAGATCAAAACAAGAACGAGCCAGATACAGTTTGTGATCAGATTCAATGGCATATTCTTCTTCCGGAGCTTCTCAAATAAAATATGTTGTTCTTCTTCTTTGTGATCTCATGCTTATCTCGGGATTGACGGGTGAAATATCAGATAATAGTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGGGAGGACATCCGTCACGGTTTTCTTGGTTATTTGACTGAGGCTTTTCATCAAAAGCAGATACATGCCTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAAGGATCATTGATTTCCTTGACCATATTCTCTGGAAACTACTCCTCTTCGCGTTGGTGTCTAGAAGAACTTGTGAAAATAATTGAGTGCAGGGAGACATATGGACAAACTGTGATACCTGTTTTCTACCATGTAAATCCCACAGATGTACGACATCAAAAGGGGAGTTATGAAAAAGCTCTTGCTGAACATGAAAAGAAATATAATTTGACAACAGTGCAAAACTGGAGACATGCTTTGAAGAAAGCTGCTGATTTATCAGGAATAAAGTCTTTTGATTACAAGTGGCCCCACAACCATAGTTAGACCAGGCTGAATGCCAGAGATGA

>Glyma03g06012.3   sequence type=transcript   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTAAAAAATTTTATATGCTGCTATTTTTTGGGTACCCCTATACAATGTGTTAATTTTGGAACTTTAAATTGCAGGTCTCGGCAGGTTATGGCTTTACACATGTAAGCTTTAGTTAAAAATCTGATCCCTCGTATGCCAAAACATCAGTTGGGTAAAATCATTCGAGAGATCAAAACAAGAACGAGCCAGATACAGTTTGTGATCAGATTCAATGGCATATTCTTCTTCCGGAGCTTCTCAAATAAAATATGTTGTTCTTCTTCTTTGTGATCTCATGCTTATCTCGGGATTGACGGGTGAAATATCAGATAATAGTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGGGAGGACATCCGTCACGGTTTTCTTGGTTATTTGACTGAGGCTTTTCATCAAAAGCAGATACATGCCTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAAGGATCATTGATTTCCTTGACCATATTCTCTGGAAACTACTCCTCTTCGCGTTGGTGTCTAGAAGAACTTGTGAAAATAATTGAGTGCAGGGAGACATATGGACAAACTGTGATACCTGTTTTCTACCATGTAAATCCCACAGATGTACGACATCAAAAGGGGAGTTATGAAAAAGCTCTTGCTGAACATGAAAAGAAATATAATTTGACAACAGTGCAAAACTGGAGACATGCTTTGAAGAAAGCTGCTGATTTATCAGGAATAAAGTCTTTTGATTACAAGTAAGCTCCCCAACGCCCATAATCAGTGCTCTATTTTGTTTTTCTCTGTTTATGTTTACTTCCTC

Coding sequences of Glyma03g06012

Limit To All Plant Sequences

>Glyma03g06012.1   sequence type=CDS   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATTCTTCTTCCGGAGCTTCTCAAATAAAATATGTTGTTCTTCTTCTTTGTGATCTCATGCTTATCTCGGGATTGACGGGTGAAATATCAGATAATAGTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGGGAGGACATCCGTCACGGTTTTCTTGGTTATTTGACTGAGGCTTTTCATCAAAAGCAGATACATGCCTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAAGGATCATTGATTTCCTTGACCATATTCTCTGGAAACTACTCCTCTTCGCGTTGGTGTCTAGAAGAACTTGTGAAAATAATTGAGTGCAGGGAGACATATGGACAAACTGTGATACCTGTTTTCTACCATGTAAATCCCACAGATGTACGACATCAAAAGGGGAGTTATGAAAAAGCTCTTGCTGAACATGAAAAGAAATATAATTTGACAACAGTGCAAAACTGGAGACATGCTTTGAAGAAAGCTGCTGATTTATCAGGAATAAAGTCTTTTGATTACAAGTGGCCCCACAACCATAGTTAG

>Glyma03g06012.2   sequence type=CDS   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATTCTTCTTCCGGAGCTTCTCAAATAAAATATGTTGTTCTTCTTCTTTGTGATCTCATGCTTATCTCGGGATTGACGGGTGAAATATCAGATAATAGTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGGGAGGACATCCGTCACGGTTTTCTTGGTTATTTGACTGAGGCTTTTCATCAAAAGCAGATACATGCCTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAAGGATCATTGATTTCCTTGACCATATTCTCTGGAAACTACTCCTCTTCGCGTTGGTGTCTAGAAGAACTTGTGAAAATAATTGAGTGCAGGGAGACATATGGACAAACTGTGATACCTGTTTTCTACCATGTAAATCCCACAGATGTACGACATCAAAAGGGGAGTTATGAAAAAGCTCTTGCTGAACATGAAAAGAAATATAATTTGACAACAGTGCAAAACTGGAGACATGCTTTGAAGAAAGCTGCTGATTTATCAGGAATAAAGTCTTTTGATTACAAGTGGCCCCACAACCATAGTTAG

>Glyma03g06012.3   sequence type=CDS   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATTCTTCTTCCGGAGCTTCTCAAATAAAATATGTTGTTCTTCTTCTTTGTGATCTCATGCTTATCTCGGGATTGACGGGTGAAATATCAGATAATAGTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGGGAGGACATCCGTCACGGTTTTCTTGGTTATTTGACTGAGGCTTTTCATCAAAAGCAGATACATGCCTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAAGGATCATTGATTTCCTTGACCATATTCTCTGGAAACTACTCCTCTTCGCGTTGGTGTCTAGAAGAACTTGTGAAAATAATTGAGTGCAGGGAGACATATGGACAAACTGTGATACCTGTTTTCTACCATGTAAATCCCACAGATGTACGACATCAAAAGGGGAGTTATGAAAAAGCTCTTGCTGAACATGAAAAGAAATATAATTTGACAACAGTGCAAAACTGGAGACATGCTTTGAAGAAAGCTGCTGATTTATCAGGAATAAAGTCTTTTGATTACAAGTAA

Predicted protein sequences of Glyma03g06012

Limit To All Plant Sequences

>Glyma03g06012.1   sequence type=predicted peptide   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYSSSGASQIKYVVLLLCDLMLISGLTGEISDNSPQIKYDVFVSFRGEDIRHGFLGYLTEAFHQKQIHAFIDDKLEKGDEIWPSLVGAIQGSLISLTIFSGNYSSSRWCLEELVKIIECRETYGQTVIPVFYHVNPTDVRHQKGSYEKALAEHEKKYNLTTVQNWRHALKKAADLSGIKSFDYKWPHNHS*

>Glyma03g06012.2   sequence type=predicted peptide   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYSSSGASQIKYVVLLLCDLMLISGLTGEISDNSPQIKYDVFVSFRGEDIRHGFLGYLTEAFHQKQIHAFIDDKLEKGDEIWPSLVGAIQGSLISLTIFSGNYSSSRWCLEELVKIIECRETYGQTVIPVFYHVNPTDVRHQKGSYEKALAEHEKKYNLTTVQNWRHALKKAADLSGIKSFDYKWPHNHS*

>Glyma03g06012.3   sequence type=predicted peptide   gene model=Glyma03g06012   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYSSSGASQIKYVVLLLCDLMLISGLTGEISDNSPQIKYDVFVSFRGEDIRHGFLGYLTEAFHQKQIHAFIDDKLEKGDEIWPSLVGAIQGSLISLTIFSGNYSSSRWCLEELVKIIECRETYGQTVIPVFYHVNPTDVRHQKGSYEKALAEHEKKYNLTTVQNWRHALKKAADLSGIKSFDYK*

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