SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38460 | AT | Annotation by Michelle Graham. TAIR10: iron regulated 1 | chr2:16103603-16105930 FORWARD LENGTH=524 | SoyBase | E_val: 6.00E-67 | ISS |
| GO:0006824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cobalt ion transport | SoyBase | N/A | ISS |
| GO:0034755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005381 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR11660 | Panther | TRANSPOSASE | JGI | ISS | |
| PTHR11660:SF2 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF06963 | PFAM | Ferroportin1 (FPN1) | JGI | ISS | |
| UniRef100_B9SL34 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9SL34_RICCO | SoyBase | E_val: 4.00E-66 | ISS |
| UniRef100_I1JL29 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JL29_SOYBN | SoyBase | E_val: 4.00E-101 | ISS |
|
Glyma03g05201 not represented in the dataset |
Glyma03g05201 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g042500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g05201.2 sequence type=transcript gene model=Glyma03g05201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTAATACACGAGACTTTTGATGTTGCAGTATTATTGATGAGAGAAATTGCAATTTGCACGTAGCAGATTAAGATAGCAATCGTGAAGGAAATGGTCAAAAGGACTGAGTGAGGGTTAAGAATCTGAAATGGAAGAAAACGTGAAATTGAAGGAGTCTCCGTTCACCGGACAACAAGGAAAGCCATCTGAACTAATCACTTATTTGTACATTGGCCACTTCTTAGCAAGATGGGGTGCCAGGTTCTTCTTTTACTTCCCAACGTTGGTTTAAACTTTTGATTTCAATGTCACAAAAATAGGAGATAATGGATTAATTTATACATTATTGTGAGTTAAAATGACTATGACGTGAGAAAATTATGAGTGTGACATGAAATATACACCACATTAGATGTGATTTTTTTTTATTGGTGGAAATTGAAGACATAAAAAGAATGTGGAAATTCTCTGTTGGTTTATACATGATCAATATTTGGTCAGAATCATTGCTGTATGCAGCAATATATGGTGCAGTTGAATCTGCCTCCATTGCAGTGTTTGGCTCCATAATTGGAAGATGGGTTGATAAGTTGTCTTGTGTGAAGCTTTGGAACTTTGATGACAGCTACCTTAAAATGGGAAGGAATACCTGCATATGTTATTGGAATAGCAAGAGGAATAAGTGTTGTGATTGGAATAGCTGCAACAGCTGTATATCCTGTGCTACAGTCTCATATATCGACCATTAGAACTGGACTTTGGTCTATATGGTCTCAGTGGAGTTGCCTCCTTCCATGTGTGGCTGCAATATGGATCCAAAGTGGCTTTCTATCATCATATATTCTGATGGGAAGTGTAGCCATTTCTCGGCTTGGATTGTGGATGTTTCATTTGTCTGTGCTTCAACAAATGCAGGATCTTGTTTCTGAATCCGATCGTTTGATTGTTGGAGGCGTTCAAAGTTCGCTTCAGTCTTTGATGGGTTTATTGGCCTATGTAATGGGAATCATAATATCTGATCCACGGGACTTCTGGAAGTTGACTTCAATATCTTCTAGCAGTCACATTAGCTGCATTCCTCTACTGTATCCACGCATACCATGTACGAAAGCACCTCTGCCACTTAGACCAAGTATTGTGGGGTAAATGTTTTGTAAGATCATCTTAAGCTGTGAGGTTCAATCTTTTTTTAGGTACAATTTTTGTATTCACTTTTCATACCATTTGAAGAAAGAGTTTGATTTCTATACACTAGCTGTGTAAAGGGTTTTCATACTCTTTAACAACCAAAAATCATGGTGGTT
>Glyma03g05201.1 sequence type=CDS gene model=Glyma03g05201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGCTACCTTAAAATGGGAAGGAATACCTGCATATGTTATTGGAATAGCAAGAGGAATAAGTGTTGTGATTGGAATAGCTGCAACAGCTGTATATCCTGTGCTACAGTCTCATATATCGACCATTAGAACTGGACTTTGGTCTATATGGTCTCAGTGGAGTTGCCTCCTTCCATGTGTGGCTGCAATATGGATCCAAAGTGGCTTTCTATCATCATATATTCTGATGGGAAGTGTAGCCATTTCTCGGCTTGGATTGTGGATGTTTCATTTGTCTGTGCTTCAACAAATGCAGGATCTTGTTTCTGAATCCGATCGTTTGATTGTTGGAGGCGTTCAAAGTTCGCTTCAGTCTTTGATGGGTTTATTGGCCTATGTAATGGGAATCATAATATCTGATCCACGGGACTTCTGGAAGTTGACTTCAATATCTTCTAGCAGTCACATTAGCTGCATTCCTCTACTGTATCCACGCATACCATGTACGAAAGCACCTCTGCCACTTAGACCAAGTATTGTGGGGTAA >Glyma03g05201.2 sequence type=CDS gene model=Glyma03g05201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGCTACCTTAAAATGGGAAGGAATACCTGCATATGTTATTGGAATAGCAAGAGGAATAAGTGTTGTGATTGGAATAGCTGCAACAGCTGTATATCCTGTGCTACAGTCTCATATATCGACCATTAGAACTGGACTTTGGTCTATATGGTCTCAGTGGAGTTGCCTCCTTCCATGTGTGGCTGCAATATGGATCCAAAGTGGCTTTCTATCATCATATATTCTGATGGGAAGTGTAGCCATTTCTCGGCTTGGATTGTGGATGTTTCATTTGTCTGTGCTTCAACAAATGCAGGATCTTGTTTCTGAATCCGATCGTTTGATTGTTGGAGGCGTTCAAAGTTCGCTTCAGTCTTTGATGGGTTTATTGGCCTATGTAATGGGAATCATAATATCTGATCCACGGGACTTCTGGAAGTTGACTTCAATATCTTCTAGCAGTCACATTAGCTGCATTCCTCTACTGTATCCACGCATACCATGTACGAAAGCACCTCTGCCACTTAGACCAAGTATTGTGGGGTAA
>Glyma03g05201.1 sequence type=predicted peptide gene model=Glyma03g05201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTATLKWEGIPAYVIGIARGISVVIGIAATAVYPVLQSHISTIRTGLWSIWSQWSCLLPCVAAIWIQSGFLSSYILMGSVAISRLGLWMFHLSVLQQMQDLVSESDRLIVGGVQSSLQSLMGLLAYVMGIIISDPRDFWKLTSISSSSHISCIPLLYPRIPCTKAPLPLRPSIVG* >Glyma03g05201.2 sequence type=predicted peptide gene model=Glyma03g05201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTATLKWEGIPAYVIGIARGISVVIGIAATAVYPVLQSHISTIRTGLWSIWSQWSCLLPCVAAIWIQSGFLSSYILMGSVAISRLGLWMFHLSVLQQMQDLVSESDRLIVGGVQSSLQSLMGLLAYVMGIIISDPRDFWKLTSISSSSHISCIPLLYPRIPCTKAPLPLRPSIVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
