Glyma03g05120 - SoyBase

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Report for Sequence Feature Glyma03g05120

Feature Type:	gene_model
Chromosome:	Gm03
Start:	5405047
stop:	5409407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g05120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38450	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr2:16102016-16102683 FORWARD LENGTH=138	SoyBase	E_val: 1.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR11102	Panther	SEL-1-LIKE PROTEINS	JGI		ISS
PTHR11102:SF18	Panther	HCPA PROTEIN	JGI		ISS
UniRef100_I1JL20	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JL20_SOYBN	SoyBase	E_val: 2.00E-65	ISS
UniRef100_Q10MR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10MR3_ORYSJ	SoyBase	E_val: 9.00E-31	ISS

Expression Patterns of Glyma03g05120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g05120 not represented in the dataset	Glyma03g05120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g05120

Paralog	Evidence	Comments
Glyma01g31990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g05120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g041800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g05120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g05120

Limit To All Plant Sequences

>Glyma03g05120.5   sequence type=transcript   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTATCGTCCAAAACGGCGTCGTAAAAACATAGAGGCCCACAGGGACATAGGAAAACGTTGTTGCTCGACAAATAGTCCTTCTCTTCCTCTCTCTCATTGAAACCAAAAACTGATCTTCGAATAGCATCGCAAAGACTCAAAACCACCCCAAAATAACAAGAAAATCCAATTTTTTAGGCTCTCACAAAAACGGGTGGAGAAAAAAAAAACTTGAACACTGAACCTACGTTGAAGCTGAAAGTGGTTGAAAGGGGGTTATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAAGCAAGCGTAATTTGGTTTTGTGCTTAAAATTATGGAAGGTCTGCCCGGCACCTTACCTATGCAATAGCCATCGTGGATGTTTGTGTAACTTGCAGTTTAAAATCTAGTTTTTGATTTGTGTATGATTTGCTATTCTAATTTTATTTTTTTGGGTTCTATAGAGGGAAGGAAAAATGATTTAATGCTCATAGTTTGGAGGACATGTATAAAATTATTTTGGGTATCGTTACTGTCATGTTAAATACTTGAATATAATTTGTCTTAGATTATGTTCAAAATTAGTTGATAAGTTGGT

>Glyma03g05120.6   sequence type=transcript   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAGTTTATTTTTTTTCATTCAAATTTTCAATTTCTCAGCCTCTTTTCCTGTTTCTTCGTTTCTTTCTGAATATTTAAATTTTTCGTTTTAAATCCTCAGCATTGAAACCAAAAACTGATCTTCGAATAGCATCGCAAAGACTCAAAACCACCCCAAAATAACAAGGCTCTCACAAAAACGGGTGGAGAAAAAAAAAACTTGAACACTGAACCTACGTTGAAGCTGAAAGTGGTTGAAAGGGGGTTATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAAGCAAGCGTAATTTGGTTTTGTGCTTAAAATTATGGAAGGTCTGCCCGGCACCTTACCTATGCAATAGCCATCGTGGATGTTTGTGTAACTTGCAGTTTAAAATCTAGTTTTTGATTTGTGTATGATTTGCTATTCTAATTTTATTTTTTTGGGTTCTATAGAGGGAAGGAAAAATGATTTAATGCTCATAGTTTGGAGGACATGTATAAAATTATTTTGGGTATCGTTACTGTCATGTTAAATACTTGAATATAATTTGTCTTAGATTATGTTCAAAATTAGTTGATAAGTTGGT

>Glyma03g05120.7   sequence type=transcript   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTTTCTGAATATTTAAATTTTTCGTTTTAAATCCTCAGCATTGAAACCAAAAACTGATCTTCGAATAGCATCGCAAAGACTCAAAACCACCCCAAAATAACAAGCCAGAAAATCCAATTTTTTAGGCTCTCACAAAAACGGGTGGAGAAAAAAAAAACTTGAACACTGAACCTACGTTGAAGCTGAAAGTGGTTGAAAGGGGGTTATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAAGCAAGCGTAATTTGGTTTTGTGCTTAAAATTATGGAAGGTCTGCCCGGCACCTTACCTATGCAATAGCCATCGTGGATGTTTGTGTAACTTGCAGTTTAAAATCTAGTTTTTGATTTGTGTATGATTTGCTATTCTAATTTTATTTTTTTGGGTTCTATAGAGGGAAGGAAAAATGATTTAATGCTCATAGTTTGGAGGACATGTATAAAATTATTTTGGGTATCGTTACTGTCATGTTAAATACTTGAATATAATTTGTCTTAGATTATGTTCAAAATTAGTTGATAAGTTGGT

Coding sequences of Glyma03g05120

Limit To All Plant Sequences

>Glyma03g05120.4   sequence type=CDS   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAA

>Glyma03g05120.5   sequence type=CDS   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAA

>Glyma03g05120.6   sequence type=CDS   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAA

>Glyma03g05120.7   sequence type=CDS   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGTTCCGTTGGGGGAGAGAGGAGTGGACGCGTGGCACTATCAGAGGTGGTGGCAGATTGTGTGAAACGGTGGTTCAGAGATGCACTGAAAGAGGCCAAGGCAGGGGACATAAACATGCAAGTGTTGGTGGGTCAGATGTACAACAGTGGCTATGGGGTTCCTAGAGATGCTCAGAAGGGAAGAGTTTGGGTTACCAAAGCATCTAAGGCTAGGTCTTCAGTTTGGAAAGTAGGTGATAAGCACCCAGGTTATAATGCAAGTGACTCTGATTCGGATGAATTGAAGGAGGATTCATAA

Predicted protein sequences of Glyma03g05120

Limit To All Plant Sequences

>Glyma03g05120.4   sequence type=predicted peptide   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDAQKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS*

>Glyma03g05120.5   sequence type=predicted peptide   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDAQKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS*

>Glyma03g05120.6   sequence type=predicted peptide   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDAQKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS*

>Glyma03g05120.7   sequence type=predicted peptide   gene model=Glyma03g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDAQKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS*

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