SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05340 | AT | Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324 | SoyBase | E_val: 4.00E-120 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004601 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxidase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| PF00141 | PFAM | Peroxidase | JGI | ISS | |
| UniRef100_P22195 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cationic peroxidase 1 n=1 Tax=Arachis hypogaea RepID=PER1_ARAHY | SoyBase | E_val: 2.00E-142 | ISS |
| UniRef100_UPI00018C66EA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C66EA related cluster n=1 Tax=unknown RepID=UPI00018C66EA | SoyBase | E_val: 0 | ISS |
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Glyma03g04880 not represented in the dataset |
Glyma03g04880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g039800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g04880.1 sequence type=CDS gene model=Glyma03g04880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGATGTTCTCAACAAAGGCTGATTGTTATGTTTTTATGTCTCATTGGGATAGTTTCAGCTACAGATTTAACTTCTTCAGCTGTGAGTTTAGCTGATTATGAGTTAAGCACCACTTTTTATCTTTTAAAGTGTCCCCTGGGCCTCTTTACCATTAATAACCTAGTAACCGCTGCTGTGCGGAAAGAGTCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAGGATGTGATGCATCGGTTTTGTTAAAGAACACTGCAACTTTCACGGGCGAACAAGGTGCCTTCCCCAACGCTAATTCTCTAAGGGGTTTCGAAGTCATAGACAACATAAAAGCAAAATTAGAGATTTTGTGCCCTGGGGTTTTCTCTTGCGCTGACATCTTAGCCGTTGCTGCAAGGGATTCTGTTGTTGCTCTTGGTGGACTTGGGTGGCAAGTTCGCTTGGGGAGAAGGGACTCAACCACTGCAAGTTTAAGTGGAGCTAACTCAGATTTACCAGCTCCCTTTCTGGGTCTTACTGACCTTGTTGCTGCTTTCCAAAAGAAGGGTTTCACAGTAAATGAAATGGTTGCTTTATCAGGTGCTCACACAATAGGCAGCGCCAGGTGTTTAACCTTCCGATCAAGGGCTTACAACGATAGCGATATAGAACCCTCGTATGCAAATTTCTTGAGAAGCAACTGTCCCAAGAGTGGTGGTGATGACAACTTGTCTCCTATAGATATCGCCACTAAAGACATTTTTGACAATGCTTACTACCGGAATTTACTTTACAAAAAGGGTCTTTTCCACTCTGACCAACAGCTCTATAGTGGCAGTTTCACGGACTCCAAAGTTAAATATTATGCCACCTACCCATCACTTTTCTTCAAATCAGATTTCGCTAACGCCATGCTCAAGATGAGCAACCTTAGCCCACTTACAGGGACACAGGGTCAGATCAGAAAAGTATGCAGCAGAGTGAATTAA
>Glyma03g04880.1 sequence type=predicted peptide gene model=Glyma03g04880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGCSQQRLIVMFLCLIGIVSATDLTSSAVSLADYELSTTFYLLKCPLGLFTINNLVTAAVRKESRMGASLLRLHFHDCFVQGCDASVLLKNTATFTGEQGAFPNANSLRGFEVIDNIKAKLEILCPGVFSCADILAVAARDSVVALGGLGWQVRLGRRDSTTASLSGANSDLPAPFLGLTDLVAAFQKKGFTVNEMVALSGAHTIGSARCLTFRSRAYNDSDIEPSYANFLRSNCPKSGGDDNLSPIDIATKDIFDNAYYRNLLYKKGLFHSDQQLYSGSFTDSKVKYYATYPSLFFKSDFANAMLKMSNLSPLTGTQGQIRKVCSRVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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