SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45820 | AT | Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 20 | chr5:18587081-18588400 REVERSE LENGTH=439 | SoyBase | E_val: 8.00E-24 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| PTHR24343 | Panther | SERINE/THREONINE KINASE | JGI | ISS | |
| PTHR24343:SF45 | Panther | SERINE/THREONINE-PROTEIN KINASE PTK1,2/STK1,2 | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_C6TA00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=C6TA00_SOYBN | SoyBase | E_val: 1.00E-32 | ISS |
| UniRef100_Q8H2C2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine kinase n=1 Tax=Persea americana RepID=Q8H2C2_PERAE | SoyBase | E_val: 1.00E-24 | ISS |
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Glyma03g04795 not represented in the dataset |
Glyma03g04795 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g038900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g04795.2 sequence type=transcript gene model=Glyma03g04795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACAAAGGCCTTTTTTTTAAAAAAAAGAACACAAAGAGAGAGAGGTCTTCTCAAACCATCTTGCAGGTGTGTCTTTCATTGTATATTCTGCTGCTGGGTTAATTGGAAGGCTAACCAGGTGCTGCTTCATTCCTTAATTATTCTTCAAACTTTCCAAGAAGTCCATATTCTTCATTGTTCTCTAGTGTCATCACCAAAATCAGGGAATGCTGAAAGATGTGCTTGACAGTTAAGAATTCCTTCACCGAGGCTAATGAGTTCGTGCCTCCATCTGAGCAATCCTTGTTCAACCTTGATGACATTGGATGTTTAGTCCACTGTCCATATCTATTTTTTGCTCGAGCGACTGAGGTGCCAAGAAATCTCAGCCATTGTGCAATATCCAAACACAATGATTGTGAAGATGGTTGAGCTTTGAGTTTCCTGCTTCTGGCCGCATGATTGCCAAGATATTGGTTTTCACCACAAAGTGTTTCTAGAAATGGAGCAAAAAGGAGGTGTGCTTATGCAACGATATGAACTGGGGAGATTATTAGGCCAAGGAACCTTTGGGAAAGTCTACCATGCTAGGAACATCATAACTGGCATGAGTGTGGCCATTAAGATTACTGACAAGGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATTAAACGCGAAAGTTCAAATTGCACCAGATGTACGCAGGTTGCTGTCGAAAATCTTGGATTCAAACCCAAAGACAAGGATATCAATGGCCAAAATCATGGAAAGTTCTTGGTTCAAAAGGTGGTTAGAGAAGCCTACCATTACTCGGAACGAAGACCAAGAACTGGCTCCTCTGGATGCATTATTTGTGAAAAAATTGTTTTAGTATGTGAAAAAATCTCATCACTTTAAACTTTAAAGTTAAGAACAAG
>Glyma03g04795.1 sequence type=CDS gene model=Glyma03g04795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAAAAAGGAGGTGTGCTTATGCAACGATATGAACTGGGGAGATTATTAGGCCAAGGAACCTTTGGGAAAGTCTACCATGCTAGGAACATCATAACTGGCATGAGTGTGGCCATTAAGATTACTGACAAGGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATTAAACGCGAAAGTTCAAATTGCACCAGATGTACGCAGGTTGCTGTCGAAAATCTTGGATTCAAACCCAAAGACAAGGATATCAATGGCCAAAATCATGGAAAGTTCTTGGTTCAAAAGGTGGTTAGAGAAGCCTACCATTACTCGGAACGAAGACCAAGAACTGGCTCCTCTGGATGCATTATTTGTGAAAAAATTGTTTTAGTATGTGAAAAAATCTCATCACTTTAA >Glyma03g04795.2 sequence type=CDS gene model=Glyma03g04795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAAAAAGGAGGTGTGCTTATGCAACGATATGAACTGGGGAGATTATTAGGCCAAGGAACCTTTGGGAAAGTCTACCATGCTAGGAACATCATAACTGGCATGAGTGTGGCCATTAAGATTACTGACAAGGAGAAGATTCTGAAAGTTGGGATGATTGATCAGATTAAACGCGAAAGTTCAAATTGCACCAGATGTACGCAGGTTGCTGTCGAAAATCTTGGATTCAAACCCAAAGACAAGGATATCAATGGCCAAAATCATGGAAAGTTCTTGGTTCAAAAGGTGGTTAGAGAAGCCTACCATTACTCGGAACGAAGACCAAGAACTGGCTCCTCTGGATGCATTATTTGTGAAAAAATTGTTTTAGTATGTGAAAAAATCTCATCACTTTAA
>Glyma03g04795.1 sequence type=predicted peptide gene model=Glyma03g04795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQKGGVLMQRYELGRLLGQGTFGKVYHARNIITGMSVAIKITDKEKILKVGMIDQIKRESSNCTRCTQVAVENLGFKPKDKDINGQNHGKFLVQKVVREAYHYSERRPRTGSSGCIICEKIVLVCEKISSL* >Glyma03g04795.2 sequence type=predicted peptide gene model=Glyma03g04795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQKGGVLMQRYELGRLLGQGTFGKVYHARNIITGMSVAIKITDKEKILKVGMIDQIKRESSNCTRCTQVAVENLGFKPKDKDINGQNHGKFLVQKVVREAYHYSERRPRTGSSGCIICEKIVLVCEKISSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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