SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G06541 | AT | Annotation by Michelle Graham. TAIR10: TTF-type zinc finger protein with HAT dimerisation domain | chr2:2598222-2600326 REVERSE LENGTH=592 | SoyBase | E_val: 8.00E-141 | ISS |
| PTHR11697 | Panther | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN | JGI | ISS | |
| PTHR11697:SF9 | Panther | TRANSPOSASE-LIKE PROTEIN | JGI | ISS | |
| UniRef100_G7J811 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerization domain containing protein n=1 Tax=Medicago truncatula RepID=G7J811_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JL01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JL01_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g04730 not represented in the dataset |
Glyma03g04730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g038400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g04730.2 sequence type=CDS gene model=Glyma03g04730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTGTTGGAAACAGATCCAGGAATTAGGCCTCCAATTTCAAGCTATCATCCTGACATCCAAAATGAGACGTAGATTTTGCAAAAATTGGTTTGATTTGTATGATTGGATTGATTATAGTGAATCTAAGGACCTAGCATTTTGCTTGCCATGTTTTTTGTTTAAGAATGTCTCTAAATATGGGGGAGATCACTTTGTGACCGAGGGGTTTAGTGATTGGAAGAATTCTCAAAGATTGGCTAATCATGCTACTTCTTCCAATAGTCATGTTGATTGTGTGCATATGAGTTATGCTCTCATGAACCCAAACCAAAGCATTAAGGCTGCATTTGTTAATCAAGCTAAACAAATGAATTCCGAATATCGTGTTCGTGTAAACACATCTCTTATAGCTACTAAGTTTCTTTTGAGGTGTGGCATGCCATTTAGAGGGAGTGACGAGTCCTTTAACTCTTTATTTAAGGGGTCATTTCTTGAGTTGGTGGACACTTTAAAGGAAATTAACCTAGAAATAGCTAATGTAATTGATTGTACTCCGGGCAATAACTTTATGACTGCTCCTACGATTCAAAAGGATCTTGTTGTTGCTTGTGCATGTGAAATAACTCAACAAATTGTATGTGATATTGCGGATGATGTATTTTGTGTTTTGATTGATGAATCCGGTGATGTTGCTGGTAAAGAACAAATGGTTGTTGTTATTCGCTATGTTAATAGTGAAGGTTTTGTAAAAGAAAGGTTTCTTGGGATTGTTAGTGTTAAAGAAACAAGTGCTAAGTCACTGAAGGAGGCACTTGAGAAGTTGTTGTCTATTAATGGCTTGAGTTTATCTAGCATAAGGGGGCAAGGATATGATGGAGCTAGCAATATACGAGGTAAGTTTGGTGGTTTGAGAACTTTAATTCAAAATGAAAATCCATCTGCTTATTATGTGCATTGTTTTGCCCATCAACTTCAATTGGCACTTGTTGCATGTGCTAAGACTCACAAAGATGTTAGTGGTTTTTTCGGTAAGGTCAATATGCTTGTTAATTTCATACGGTCTTCTAATAAGAGACAAGAATTGCTTCGGGACAAACAAGTATCTCAATTTGCTAAATTGATTGAAGAGGGTCAGATAGAGACTGGTAGTGGATTAAATCAAAAATCGTCTATTGCTAGAGCGGGTGACACTCGTTGGAAGTCGGAAAAGATACGTCATTTGAAAATATGTATAGCGCTACAAAAGTGTGATCAAGATCTTTTGAATGCTTTATCACTTGTCAAAGCCACCAAAGAAGAATTACAAGAAATGAGGAATAATGGATGGGAAAAACTTATATCTAAGTTTATGGAAATTTGCAATAAGCATGATATTGATATGCCTGATTTGGATGCACCTGTTTTAGATTTGCAGTTGCATGAGCTCAATGCTAGGTTTGATGAAGAGAATACTGAACGTTTACAATGTGTTTCATGTTTGAGTCCCTCATCATCATTTGAAGATTTTGATGTGAAAAAATTGTTGAGGATGGTTGAACTTTATCCAAATGATTTTGTAGATGTGCCGGAAGTGGTGGTGCGACATCAGCTTCAGAATTATGTTAAAAATGTTCGATGTGATCCAAAATTTGCAAAGTTAAATGGACTTTCAGACCTTTGTGCAAAGCTTTTGGCTTTAGTCTTGCCGGTAGCAACTGCAAGCGTGGAACGTGTTTTTTTAACTATAAAGTTTGTGAAGAGTCAGCTATGTAACAAAATGGGTGATCAA
>Glyma03g04730.2 sequence type=predicted peptide gene model=Glyma03g04730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNCWKQIQELGLQFQAIILTSKMRRRFCKNWFDLYDWIDYSESKDLAFCLPCFLFKNVSKYGGDHFVTEGFSDWKNSQRLANHATSSNSHVDCVHMSYALMNPNQSIKAAFVNQAKQMNSEYRVRVNTSLIATKFLLRCGMPFRGSDESFNSLFKGSFLELVDTLKEINLEIANVIDCTPGNNFMTAPTIQKDLVVACACEITQQIVCDIADDVFCVLIDESGDVAGKEQMVVVIRYVNSEGFVKERFLGIVSVKETSAKSLKEALEKLLSINGLSLSSIRGQGYDGASNIRGKFGGLRTLIQNENPSAYYVHCFAHQLQLALVACAKTHKDVSGFFGKVNMLVNFIRSSNKRQELLRDKQVSQFAKLIEEGQIETGSGLNQKSSIARAGDTRWKSEKIRHLKICIALQKCDQDLLNALSLVKATKEELQEMRNNGWEKLISKFMEICNKHDIDMPDLDAPVLDLQLHELNARFDEENTERLQCVSCLSPSSSFEDFDVKKLLRMVELYPNDFVDVPEVVVRHQLQNYVKNVRCDPKFAKLNGLSDLCAKLLALVLPVATASVERVFLTIKFVKSQLCNKMGDQ
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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