SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55520 | AT | Annotation by Michelle Graham. TAIR10: TATA binding protein 2 | chr1:20726150-20727483 REVERSE LENGTH=200 | SoyBase | E_val: 2.00E-136 | ISS |
| GO:0006352 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0017025 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: TBP-class protein binding | SoyBase | N/A | ISS |
| KOG3302 | KOG | TATA-box binding protein (TBP), component of TFIID and TFIIIB | JGI | ISS | |
| PTHR10126 | Panther | TATA-BOX BINDING PROTEIN | JGI | ISS | |
| PF00352 | PFAM | Transcription factor TFIID (or TATA-binding protein, TBP) | JGI | ISS | |
| UniRef100_Q42808 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TATA-box-binding protein n=1 Tax=Glycine max RepID=TBP_SOYBN | SoyBase | E_val: 9.00E-145 | ISS |
| UniRef100_Q42808 | UniRef | Annotation by Michelle Graham. Best UniRef hit: TATA-box-binding protein n=1 Tax=Glycine max RepID=TBP_SOYBN | SoyBase | E_val: 9.00E-145 | ISS |
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Glyma03g04500 not represented in the dataset |
Glyma03g04500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g036800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g04500.2 sequence type=transcript gene model=Glyma03g04500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGGGGTGTTTTTTTGTTTATGTTTTAAAGGTTTTATCTTTTTGTGTTTTGAGTTGAGAAAAAGAGAAGCGAAGTTGATTTTTTTTTTGTTATTGGTACTGATTGGTGTTGAACATGGTGGGTTTTTTTTTTTTCTTGGTGGGCAGCTCTGTGATTTTTGGGTTGATAAAAAAAATTAGGGTTTGATGGCTGACCAAGGATTGGAAGGGAGCCAACCAGTGGATCTACAGAAGCATCCTTCTGGGATCGTGCCTACCCTTCAAAATATTGTGTCCACAGTCAATTTGGACTGTAAGTTGGACCTCAAAACAATTGCACTTCAAGCTCGGAATGCAGAGTACAATCCTAAGCGTTTTGCTGCTGTGATTATGAGGATAAGAGATCCCAAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATGGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAGTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTTATGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAAATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAATTAAAGACAGCCTGTGTTGCCTTGTCTTAATTTTTTGATTGGTCATGATGTAGTAAAGTGGCAGACATTGTTCTATTGAATTGACATTTTTAAGAAAAAAGAGGATTCTGAGTCAGAATATGAGGGAAAAAAAGTTTGAGAGCTAAATGGAAAAGTAGCACATTGAGTCTGTCCCTGACAGTAGTTTGAAACTCTTTTGATAGCATCTACTATCAATTGAGCGTAGTGTGATCTGACTACTGAGTATGGAATATCTTGATCAACAAATCGAAAATTTGAGCTGCTAAATTTGTAAGTCTTTAGAATTTGGTTTACATTGATAGATGGAACTACTTAATGAGTATTTTGGACCTTTGGTTCTAAACTGAGGTGTAGTACTTCAGACTTTAGTGAATAAAGGGAATTTAAAGTTGTTGATTAAAAAATCAATGATTTTGTTACTACCATGTCTATTCTTTT
>Glyma03g04500.1 sequence type=CDS gene model=Glyma03g04500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGACCAAGGATTGGAAGGGAGCCAACCAGTGGATCTACAGAAGCATCCTTCTGGGATCGTGCCTACCCTTCAAAATATTGTGTCCACAGTCAATTTGGACTGTAAGTTGGACCTCAAAACAATTGCACTTCAAGCTCGGAATGCAGAGTACAATCCTAAGCGTTTTGCTGCTGTGATTATGAGGATAAGAGATCCCAAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATGGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAGTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTTATGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAAATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGA >Glyma03g04500.2 sequence type=CDS gene model=Glyma03g04500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGACCAAGGATTGGAAGGGAGCCAACCAGTGGATCTACAGAAGCATCCTTCTGGGATCGTGCCTACCCTTCAAAATATTGTGTCCACAGTCAATTTGGACTGTAAGTTGGACCTCAAAACAATTGCACTTCAAGCTCGGAATGCAGAGTACAATCCTAAGCGTTTTGCTGCTGTGATTATGAGGATAAGAGATCCCAAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATGGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAGTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATACGGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTTATGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAAATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGA
>Glyma03g04500.1 sequence type=predicted peptide gene model=Glyma03g04500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ* >Glyma03g04500.2 sequence type=predicted peptide gene model=Glyma03g04500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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