Glyma03g03965 - SoyBase

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Report for Sequence Feature Glyma03g03965

Feature Type:	gene_model
Chromosome:	Gm03
Start:	3881322
stop:	3882825
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g03965

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02040	AT	Annotation by Michelle Graham. TAIR10: C2H2-type zinc finger family protein \| chr1:358104-359078 REVERSE LENGTH=324	SoyBase	E_val: 6.00E-13	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_G7JJH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7JJH5_MEDTR	SoyBase	E_val: 2.00E-95	ISS
UniRef100_UPI0002336FA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336FA9 related cluster n=1 Tax=unknown RepID=UPI0002336FA9	SoyBase	E_val: 3.00E-119	ISS

Expression Patterns of Glyma03g03965

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g03965 not represented in the dataset	Glyma03g03965 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g03965

Paralog	Evidence	Comments
Glyma01g32961	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g03965 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g033700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g03965

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g03965

Limit To All Plant Sequences

>Glyma03g03965.1   sequence type=CDS   gene model=Glyma03g03965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGATATCGGATCAACAATCAAACTTCAAGCACTTCTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGGAGAGCTTTGGGAGGTCACATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGAAATGTGCCACCAAGCAACAAACGCATGTATGCCCTAAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTGTGTGAGAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAGGATGCTGAGTCCTTAGTCTCCTCTCCCGGGTCTGACGCCGACGATGGTGACATCGGTGGTGGCGGCCGGAGAGGATGTGGATGGTCCAAAAGTAAAAGGTCGTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTTGCAAATTGTCTACTGATGTTATCCAATGCCATTGTAGATCCTCTTGATGATGTCATTACACATGAAGAGTTTTTCCCTACTAAAAAAAACTCCACCCTCCAATTTGACCATGGAAGCTCCAACCCCTCATTGGCCTCTTCCTCCAAGAGAAAATCCAAAGTGCATGAATGCTCCATTTGCCATAGGAGCTTCTCTTCGGGACAAGCATTGGGGGGACACAAAAGGTGCCATTGGATCACTTCAAATGCTCCTGACACCTCCACATTAACAAGATTTCAACAATTCCAAGAGCACTTGGATCAAATACCCAAATTTGATACCTCTTCCGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCCTCTAATGACCTTGCAAGAAGGAATGTGAACACAGAATTTTACTTGCAGCCTTGGGTTGCATCAAAGGATGCTAAAGATGATAACAATAATAGCCATTGTCAAAGTCTCCACAACCCTAATAACAATGTTGATGTTGACAATGATGAGGACAAAAACAACAACAACAACAACAACTCAATGCAAAACATGGATAATGAAGCTGATAGTAAGATCAAGTTGGCGAAACTGAGTGAGCTAAAGGACATGAAAGCTGGTGGCAGTTCTTCGCCATGGTTGCAGGTGGGGATCAGTTCAACTGCTACTGATGTGGAAGCTGATAACTGCTGA

Predicted protein sequences of Glyma03g03965

Limit To All Plant Sequences

>Glyma03g03965.1   sequence type=predicted peptide   gene model=Glyma03g03965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALISDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDADDGDIGGGGRRGCGWSKSKRSLRTKVGSFNYNCPSSEEEDLANCLLMLSNAIVDPLDDVITHEEFFPTKKNSTLQFDHGSSNPSLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFQEHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVNTEFYLQPWVASKDAKDDNNNSHCQSLHNPNNNVDVDNDEDKNNNNNNNSMQNMDNEADSKIKLAKLSELKDMKAGGSSSPWLQVGISSTATDVEADNC*

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