SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00060 | AT | Annotation by Michelle Graham. TAIR10: Nucleotidyltransferase family protein | chr4:21437-27996 FORWARD LENGTH=1481 | SoyBase | E_val: 0 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| PTHR23092 | Panther | TOPOISOMERASE-RELATED PROTEIN | JGI | ISS | |
| PTHR23092:SF1 | Panther | TOPOISOMERASE-RELATED PROTEIN | JGI | ISS | |
| PF01909 | PFAM | Nucleotidyltransferase domain | JGI | ISS | |
| PF03828 | PFAM | Poly(A) polymerase | JGI | ISS | |
| UniRef100_F4JH01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleotidyltransferase family protein n=2 Tax=Arabidopsis thaliana RepID=F4JH01_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339932 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339932 related cluster n=1 Tax=unknown RepID=UPI0002339932 | SoyBase | E_val: 0 | ISS |
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Glyma03g03883 not represented in the dataset |
Glyma03g03883 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g33160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g032900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g03883.1 sequence type=CDS gene model=Glyma03g03883 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATAAGGAGAAAAGAGAAAACACAAAGTTTAACGTGGTTCAGCACACAATGAAGAAGGTCTCAAGGTCATATATTCCTCGTTTCAGTTTCACTCTCTCCTTTTCCTTTATCCGTTGTATCCAAACACGGCCAAACAAACAAACACATAAAAGGAACCCAAAAAAACAAAAAGAAATATCTAGCGTAGATTCCTCCCTTTCGCCATTCTCTTCTCCCTCACACCATGATTATCCCTGCAACCTGCTAAAGCAAAACACCGAAAACGAAAACAAAAACCAAACAATCCCTAAACTCCTTCCCATGGCTCACCACCAACTCATCGACACCCTCACCTCTCACATCTCACTCTACCATTCCCAATCCCCAAACCCTAACCCCAACCCTAACCCTAACCCTCGATCATCCATTTTGAAATGGTTTTCTTCTCTTTCCATTCACCACCGCCAGGCTCATTTAACAATCGTGGATGCGAATTTCGTTCAGATCCTTCTCCAGATGCTCGCGAAGCTCCGATCTCACGGCCACGGCTCCTTCATCCTCCTCCCTGATCTGCCCTCGCGCGACAACCTCCCCACCCTCTGCTTCAAGAAGTCCCGCGGCCTCCTCGCCCGCGTCGCTGACTCGGACGCCGCTGGGCGGGCCGTCTTCGAGTCCTCCCGCCTGTTTGACTCGCGCGAGGGCGAGGAGGCCGCCATTGCCACGCTGCCCTCGGCCAGGCGGCTCGACGCGCTGGCGCTTGCCGAGGGCTTCGTCGGGGACGTGGACAGGTTCGTAGAGGCCATGGACCGGATTTCCGGCGGTGGGTTCCTCCGCGGGGAGGAGGCCGAGCTCGGCGAGGACTGGGTGGAGTTGCATTGGCTGAAATCGAAGGGATACTATGGAATTGAGGCGTTTATTGCGAATAGGATCGAGGTTTCAATGAGGTTGGCGTGGTTGAATTGCTGTGGAGGGAGGAAAAGGGGTGTGAAATTGAAGGAGAAGATGGGTGCTGCGGGTGTTGGGGTGAATGTGTTTTGGAGGAAGAAGGGGTGTGTGGATTGGTGGGGGAATTTGGATGCTGGGACCAGGAGGAAGGTCATTTCCACCTTCCTCATGAAAGCTGCAAAACCCTTGACTCATGATGTTTTGGAAGTGGCAAGTAGTTCCTCTGAAGATGAGATTTGGCTATACAGTATGGGAGTGGATAAATTACTGCAAAGCAATCATCCTGTGCCATCTAAACGTAGCATTTCCGCTCTTCCTGCCGATATGGAATTTGGAACAGTTATTTCGTCAGTCACTTTTTGTAAAAAACCTGCTGCTTTAGCCAGAGCCTTTAATTCTTTATTAGTACTTCATGATGTTAATATGATGGTTACATCAAGTCTTAATAGTGAATATGACATAGAAAACCTTTTCTTTAGTTCGTTGGGTTCTGTCTGTACGATATCTGATTGTATATTAAGAAAAATGCGGGGATTTCTGATGGTTATTTCACTTGACTGCACAAAACTTGAACTATTAGGAGAGGAACATGACAAGTCTTCATCAGGTAAACCTAAAGAAAAGCCTAGTGTTTCTAACCGTAAAAAGAAGGGACGAAATCGCAATAATAAAAGGCAAAATCCTGTCTCTAAGACTTGTGTGGATGATATTTCACATGAAAATCCACTGAAGGACATTGATTGTAAAGTGGATAATAAAAAGAAGACTGATTTAGTGGCATCCAGTGAACTTCCTGCTGTTCATATGGGGAAGGAGATTTCTATGGAGTTCCCATCATCAACTGTAAAAATGGATCATACTCAAGGATTGGATATTGGCAAAATAAAAGTACGGACCACTTCAAGAAGTAGAAAAGAGAAAAATAAAAGTAAAAATATTCTCATCAGTGCAGGTGGAGATTCTCAAAAGTCAAGTATCCATGCTGCCTCTACCACAGTTATTTCTGAAGGTGAGGTGGCAATATGTGATAGGTTTTTGAATAGTTCTACCATTCAGAATGTCAAAAATGACAATGCAATTGGTAATGACATCCTTGCTTCAAATTCAAGCCTTTGTAGTTCTCTTAGTGGGCTTAGTAGGGAGAACAGTTCTACCAGGAAAGTTGAAGGAAAGACTGAAGATCTTGCTGAAAGTGGCAATAGTTTAGGTCCTCAGTGTTGTTTATTGTCAGATGAAAGGAAAACTTTATGTTCTGGATTAGATACTTTAACTTGTGACATAGATTGTACTGCTGCTACAACTCCTCCTGTACCTGCGGTGAAACAAGGTAGTTTCTTCAGCAAGGAAGATACCTGTCCTTTGAACTCATCATGTGCTGCCAAAGCTGATTTAAAGACCACTGTTCCTGACAAACCAATTAGAGAGGTTAATGCAAAAGAATTTGGGTTGTTGAAGGAGCGTGATAGATGTCTATTTGAAAGTAGAAATTCAGCTTTCTCAAAGTGCAGTCCATATGAGTGGCCTGGCTTACCTTCTATCTATTTTCCATCTTTTAACTCACATCTCCCTCCTGCCACAGATAGATTACATCTGGATGTTGGGCACAATTGGCATAATCACTTCTGCCACCCATTTGTTCCCACATTACAGCAGGCAAGAAATCCTCCTATTGAAGGTGGGTGCAACCCAATCCTGTCTCGTCCTATTCCTATGAGTTTTGACTGGCCCCCAGTTTTTCGTGGTGGCATGACCCCATCACCAAACTATAACTATGACTCTGGTTTTATATCTAGGAAGCAATGTACCTTTTCAAAAGGATTGGCTGTTCACAACATGCAGGTTGATGCAACTGCTCCTGATGATGAAAGAAAATATTCCGGGGATGTATGGGATTTACCTGATCTGACAAATACATTGGAGCTAGCTGATGAATTTGACAATCACTGTGTATCTGAGGAAGAGTATGAGGTTCATACTGTTTCTGGTATAGATTATAATCAATATTTTGGTGGCGGTGTAATGTACTGGAACCCTTCTGACTATCCAGGGAAAGGTTTCTCCCGGCCTCCCTCGCTTAGCTCTGATGACAGTCTATGGGCTTTGCGTGATGCTGACATGAATAGGACGGTGGATGATATGGTTGCTTTCTCTTCTTCGTATAGTACGAATGGTTTAACATCACCCACTGCTGCTACATTTTGTTCTCCTTTCGATCCTGTAGGAACTGCTACCCAGACTATTGGTTATGTGATGTCAGGTAATGAAGTACCTGGAAAGATGCTGCATTCTTCTTCAGTTACAGATGCAGCAGTGGATGAAGATACTTCTGGTTCTTTGGGTAATAATTTGCCTGGAGAAGTTGAAGGAAAGGCAGGTGATTCACATCCATATCCTATTCTACGGCCAATAATTATTCCTAACTTGTCAAGGGAAAGGTTTGATCATAAAAGTCCCTGTGTTCCTCCCTCCAGGCGGGAGCAGCCTCGTATAAAGCGGCCACCATCGCCTGTAGTGCTTTGTGTTCCACGTGCACCTCGTCCACCCCCACCATCCCCTGTGAGTGACTCCAGGAAACACAGGGGTTTTCCCACTGTTAGATCTGGTAGTTCCAGCCCTAGGCACTGGGGAATGCGAGGCTGGTATCATGATGGGAGTAATTTTGAGGAAGCATGTTTAAGAATGGATGGTGCTGAAGTTGTGTGGCCTTGGAGAAGTAATAATCTTGCGGTGCGACCTTTGATTCAGCCTTTACCTGCTGCCTTGCTGCAGGACCGCCTGATTGCATTGTCACAGATAGCACGTGACCAGGAACACCCAGATGTCACCTTCCCCTTGCAACCTCCAGACTTACAAAGCTGTTCTGCACAGAGTGCATCTTTAACTTTGATGCATGGCATTCTACATGATGAGATTGACTCTTTCTGTAAACAGGTTGCTGCAGAAAATATGGCCAGGAGGCCTTACATTAATTGGGCTGTCAAGAGAGTTACACGATTTCTGCAGGTTCTGTGGCCCAGATCCCGTACAAACATATTTGGTTCCAATGCAACTGGTATGTCCCTTCCAACAAGTGATGTTGACCTTGTGGTTGGTCTCCCTCCAGTGAGAAACCTGGAACCTATTAAAGAAGCTGGAATACTGGAAGGTCGTAATGGAATTAAAGAAACGTGTCTTCAGCATGCAGCTAGGTATCTTGCCAATCAGGATTGGGTGAAAAATGATTCTCTGAAGACAGTGGAAAATACAGCTATTCCTATTATTATGCTTGTGGTGGAAGTACCTCAGGATGTTATTACCTCTTTAGCTCCTATGATACAGTCGTTAAATGAAGAGCCACATTGTACTCCTGGAGAACATGGTAATGACAATCAATCTGATAGCATTCGGTTAGAAGATTCGGCTTTGCCCAAAGGCTCCCAAATGAAATTTGATGCCTTGAAATCGAAATCAGTTAGACTGGACATCAGCTTCAAGTCCCCATCACATACTGGACTCCAGACTACAGAAATGGTTAAGGAGTTGACAGCGCAATTTCCTGCTGCTACACCTCTTGCTTTGGTACTAAAACAGTTTTTGGCTGATCGGAGCCTTGATCAGTCCTACTCTGGTGGCTTAAGTTCCTACTGTTTGGTCTTACTAATTATACGATTTCTTCAGCATGAGCACCATCTTGGCCGGCCAATCAACCAAAATTATGGAAGCCTTCTGATGGATTTTCTTTACTTTTTTGGGAATGTGTTTGATCCTCGCCAAATGAGAATATCAGTTCAGGGAACTGGACTTTATATAAAAAGAGAAAGAGGTTGTAGCATTGATCCAATTCACATAGATGATCCTCTTTTTCCAACAAATAATGTGGGAAGGAATTGCTTCCGAATACATCAATGTATTAAGGCATTTTCAGAAGCTTACTCTGTTCTTGAAAATGAACTCAAATTCCTAAATAGTGATGGTGAGTCATGTTCAAGGCCACCTGACAGACTGCTTCCAAAAATCATTCCAAGTCTTGATATATCATAA
>Glyma03g03883.1 sequence type=predicted peptide gene model=Glyma03g03883 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKEKRENTKFNVVQHTMKKVSRSYIPRFSFTLSFSFIRCIQTRPNKQTHKRNPKKQKEISSVDSSLSPFSSPSHHDYPCNLLKQNTENENKNQTIPKLLPMAHHQLIDTLTSHISLYHSQSPNPNPNPNPNPRSSILKWFSSLSIHHRQAHLTIVDANFVQILLQMLAKLRSHGHGSFILLPDLPSRDNLPTLCFKKSRGLLARVADSDAAGRAVFESSRLFDSREGEEAAIATLPSARRLDALALAEGFVGDVDRFVEAMDRISGGGFLRGEEAELGEDWVELHWLKSKGYYGIEAFIANRIEVSMRLAWLNCCGGRKRGVKLKEKMGAAGVGVNVFWRKKGCVDWWGNLDAGTRRKVISTFLMKAAKPLTHDVLEVASSSSEDEIWLYSMGVDKLLQSNHPVPSKRSISALPADMEFGTVISSVTFCKKPAALARAFNSLLVLHDVNMMVTSSLNSEYDIENLFFSSLGSVCTISDCILRKMRGFLMVISLDCTKLELLGEEHDKSSSGKPKEKPSVSNRKKKGRNRNNKRQNPVSKTCVDDISHENPLKDIDCKVDNKKKTDLVASSELPAVHMGKEISMEFPSSTVKMDHTQGLDIGKIKVRTTSRSRKEKNKSKNILISAGGDSQKSSIHAASTTVISEGEVAICDRFLNSSTIQNVKNDNAIGNDILASNSSLCSSLSGLSRENSSTRKVEGKTEDLAESGNSLGPQCCLLSDERKTLCSGLDTLTCDIDCTAATTPPVPAVKQGSFFSKEDTCPLNSSCAAKADLKTTVPDKPIREVNAKEFGLLKERDRCLFESRNSAFSKCSPYEWPGLPSIYFPSFNSHLPPATDRLHLDVGHNWHNHFCHPFVPTLQQARNPPIEGGCNPILSRPIPMSFDWPPVFRGGMTPSPNYNYDSGFISRKQCTFSKGLAVHNMQVDATAPDDERKYSGDVWDLPDLTNTLELADEFDNHCVSEEEYEVHTVSGIDYNQYFGGGVMYWNPSDYPGKGFSRPPSLSSDDSLWALRDADMNRTVDDMVAFSSSYSTNGLTSPTAATFCSPFDPVGTATQTIGYVMSGNEVPGKMLHSSSVTDAAVDEDTSGSLGNNLPGEVEGKAGDSHPYPILRPIIIPNLSRERFDHKSPCVPPSRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKHRGFPTVRSGSSSPRHWGMRGWYHDGSNFEEACLRMDGAEVVWPWRSNNLAVRPLIQPLPAALLQDRLIALSQIARDQEHPDVTFPLQPPDLQSCSAQSASLTLMHGILHDEIDSFCKQVAAENMARRPYINWAVKRVTRFLQVLWPRSRTNIFGSNATGMSLPTSDVDLVVGLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQDWVKNDSLKTVENTAIPIIMLVVEVPQDVITSLAPMIQSLNEEPHCTPGEHGNDNQSDSIRLEDSALPKGSQMKFDALKSKSVRLDISFKSPSHTGLQTTEMVKELTAQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRPINQNYGSLLMDFLYFFGNVFDPRQMRISVQGTGLYIKRERGCSIDPIHIDDPLFPTNNVGRNCFRIHQCIKAFSEAYSVLENELKFLNSDGESCSRPPDRLLPKIIPSLDIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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