Glyma03g03800 - SoyBase

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Report for Sequence Feature Glyma03g03800

Feature Type:	gene_model
Chromosome:	Gm03
Start:	3633719
stop:	3638210
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g03800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45140	AT	Annotation by Michelle Graham. TAIR10: plant VAP homolog 12 \| chr2:18611029-18612971 FORWARD LENGTH=239	SoyBase	E_val: 1.00E-113	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0439	KOG	VAMP-associated protein involved in inositol metabolism	JGI		ISS
PTHR10809	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP)	JGI		ISS
PTHR10809:SF6	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PRO	JGI		ISS
PF00635	PFAM	MSP (Major sperm protein) domain	JGI		ISS
UniRef100_B9RD68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RD68_RICCO	SoyBase	E_val: 5.00E-127	ISS
UniRef100_I1JKU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKU5_SOYBN	SoyBase	E_val: 3.00E-177	ISS

Expression Patterns of Glyma03g03800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g03800

Paralog	Evidence	Comments
Glyma01g33220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g03800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g032100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g03800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g03800

Limit To All Plant Sequences

>Glyma03g03800.2   sequence type=transcript   gene model=Glyma03g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTTAATATGGTCATGATTTTGAACATTGAAATGACGAAATTACCCTTCCATTCGATGCTCTGTATGTAAAATGTAAAATATTTTCCAAAGATCAGAGACAATCAGTGTCCCACGTTGTTGCGATTGCGACTCTCTCTTCCTACGATAACCGTTTCCTCTCGCCGGAAAACCGACATTGATCTCTCTCTCCGGCGATCCCCGCCCATCCCTCCGCCATGAGTTCCGGCGAGCTCCTCCACATACAGCCCCAGGAGCTGCAGTTTCCCTTTGAATTGAGGAAGCAGATCTCGTGCTCTTTGCAGTTGTCTAACAAGACTGACAACTATGTGGCTTTCAAGGTCAAGACAACAAATCCTAAGAAATATTGTGTTAGACCTAACACTGGAGTTGTGATGCCTAGGTCTACTTGTGATGTCATAGTGACAATGCAAGCCCAAAAGGAGGCACCTCCTGACATGCAATGCAAGGATAAGTTTCTCCTTCAAAGTGTAGTTGCTAGCCCTGGGGCAACCACAAAAGATATCACTCCAGAAATGTTCAATAAAGAATCTGGTCATGATGTTGAAGAGTGCAAGTTGAGAGTTGTTTATGTTGCTCCTCCTCAACCACCATCCCCAGTTCGAGAAGGATCTGATGAAGATTCATCCCCTCGTGCATCTGTATCTGAGAATGGGCATTCAAGTGCTGCGGAATTTACAGGGGCTTCAAAAGCTTTCAATGAGCGGGGTGAACATCAGGATGCTTCCTTTGAGGCAAGAGCTCTTATTTCCAAGGAGCTTTTGAGGCGTGATGCCGGCAGAAGCCGCGGCGGTGTACCATTCATTTACGTAGTTCTTGTTGGCATCATTGGACTCATCTTGGGTTTCCTGTTGAAGAGGACGTGACCTGAGTGATGGCCAAGTTCTCCAAAATGAGATCAATTGTAGAAAGCAACAAGAAATATGTGCGATGATGTGGAAAAACCAACTTGTTGTCTTATTGTCATGTATTGCTCCTACAAATTTGGAATGTGTGGTCAAAAAATAGGTACTTGTATCAGCCATAGCAATCATAGACAAGTGGACAAATTTGTATCATGGGAAGTGTATTGTTATCTGCTGTGGTACATGTGATCAATTCTTTAGCAGCTCCTATTTCTCACCACGACCCCTTTGGTTGTCTAATTGCTTAATCATGGCACCATGATAGTGCGTTTTTGAAGCTATTAAATTCTTCGTGGTAACACAAAATTATTCTCAAGTAAAATATATAATCA

Coding sequences of Glyma03g03800

Limit To All Plant Sequences

>Glyma03g03800.1   sequence type=CDS   gene model=Glyma03g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCGGCGAGCTCCTCCACATACAGCCCCAGGAGCTGCAGTTTCCCTTTGAATTGAGGAAGCAGATCTCGTGCTCTTTGCAGTTGTCTAACAAGACTGACAACTATGTGGCTTTCAAGGTCAAGACAACAAATCCTAAGAAATATTGTGTTAGACCTAACACTGGAGTTGTGATGCCTAGGTCTACTTGTGATGTCATAGTGACAATGCAAGCCCAAAAGGAGGCACCTCCTGACATGCAATGCAAGGATAAGTTTCTCCTTCAAAGTGTAGTTGCTAGCCCTGGGGCAACCACAAAAGATATCACTCCAGAAATGTTCAATAAAGAATCTGGTCATGATGTTGAAGAGTGCAAGTTGAGAGTTGTTTATGTTGCTCCTCCTCAACCACCATCCCCAGTTCGAGAAGGATCTGATGAAGATTCATCCCCTCGTGCATCTGTATCTGAGAATGGGCATTCAAGTGCTGCGGAATTTACAGGGGCTTCAAAAGCTTTCAATGAGCGGGGTGAACATCAGGATGCTTCCTTTGAGGCAAGAGCTCTTATTTCCAAGGTAACTGAGGAGAGGAATTCTATTGTTGAGCAAAACAGAAGACTTCAGCAAGAACTGGAGCTTTTGAGGCGTGATGCCGGCAGAAGCCGCGGCGGTGTACCATTCATTTACGTAGTTCTTGTTGGCATCATTGGACTCATCTTGGGTTTCCTGTTGAAGAGGACGTGA

>Glyma03g03800.2   sequence type=CDS   gene model=Glyma03g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCGGCGAGCTCCTCCACATACAGCCCCAGGAGCTGCAGTTTCCCTTTGAATTGAGGAAGCAGATCTCGTGCTCTTTGCAGTTGTCTAACAAGACTGACAACTATGTGGCTTTCAAGGTCAAGACAACAAATCCTAAGAAATATTGTGTTAGACCTAACACTGGAGTTGTGATGCCTAGGTCTACTTGTGATGTCATAGTGACAATGCAAGCCCAAAAGGAGGCACCTCCTGACATGCAATGCAAGGATAAGTTTCTCCTTCAAAGTGTAGTTGCTAGCCCTGGGGCAACCACAAAAGATATCACTCCAGAAATGTTCAATAAAGAATCTGGTCATGATGTTGAAGAGTGCAAGTTGAGAGTTGTTTATGTTGCTCCTCCTCAACCACCATCCCCAGTTCGAGAAGGATCTGATGAAGATTCATCCCCTCGTGCATCTGTATCTGAGAATGGGCATTCAAGTGCTGCGGAATTTACAGGGGCTTCAAAAGCTTTCAATGAGCGGGGTGAACATCAGGATGCTTCCTTTGAGGCAAGAGCTCTTATTTCCAAGGAGCTTTTGAGGCGTGATGCCGGCAGAAGCCGCGGCGGTGTACCATTCATTTACGTAGTTCTTGTTGGCATCATTGGACTCATCTTGGGTTTCCTGTTGAAGAGGACGTGA

Predicted protein sequences of Glyma03g03800

Limit To All Plant Sequences

>Glyma03g03800.1   sequence type=predicted peptide   gene model=Glyma03g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGELLHIQPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVMPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHDVEECKLRVVYVAPPQPPSPVREGSDEDSSPRASVSENGHSSAAEFTGASKAFNERGEHQDASFEARALISKVTEERNSIVEQNRRLQQELELLRRDAGRSRGGVPFIYVVLVGIIGLILGFLLKRT*

>Glyma03g03800.2   sequence type=predicted peptide   gene model=Glyma03g03800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGELLHIQPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVMPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHDVEECKLRVVYVAPPQPPSPVREGSDEDSSPRASVSENGHSSAAEFTGASKAFNERGEHQDASFEARALISKELLRRDAGRSRGGVPFIYVVLVGIIGLILGFLLKRT*

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